Variant report

Variant	rs547790621
Chromosome Location	chr11:34123533-34123534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:34123174-34128281	K562	blood:	n/a	n/a
2	POLR2A	chr11:34121383-34128525	HepG2	liver:	n/a	n/a
3	POLR2A	chr11:34119916-34128220	K562	blood:	n/a	n/a
4	POLR2A	chr11:34123354-34128182	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr11:34123323-34128328	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34122891..34125542-chr11:34164047..34165563,2	K562	blood:
2	chr11:34068673..34076707-chr11:34122442..34129826,21	K562	blood:
3	chr11:34072144..34074696-chr11:34123170..34125169,2	MCF-7	breast:
4	chr11:34106541..34110325-chr11:34122744..34126295,3	K562	blood:
5	chr11:34123093..34125521-chr11:34130481..34132154,2	MCF-7	breast:

No data

Variant related genes	Relation type
NAT10	TF binding region
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417541	chr11:34123446-34123919	Strong transcription Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34079000-34126600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34083400-34126600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:34083600-34124800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:34088600-34124600	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:34088800-34124000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:34091200-34123600	Strong transcription	Dnd41	blood
7	chr11:34091600-34123800	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:34091600-34124200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr11:34091800-34124200	Strong transcription	Fetal Thymus	thymus
10	chr11:34091800-34124600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:34091800-34124800	Strong transcription	Fetal Intestine Large	intestine
12	chr11:34092600-34124800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:34092600-34125000	Strong transcription	Liver	Liver
14	chr11:34093400-34124000	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr11:34093600-34125000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:34094000-34124000	Strong transcription	Fetal Lung	lung
17	chr11:34096600-34124000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:34097200-34126200	Weak transcription	Stomach Mucosa	stomach
19	chr11:34098000-34124000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:34098000-34124000	Strong transcription	Osteobl	bone
21	chr11:34098000-34124600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:34098000-34125000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:34098000-34125000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:34098200-34124800	Strong transcription	HUVEC	blood vessel
25	chr11:34098200-34125400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:34101400-34123800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:34103800-34124000	Strong transcription	NHDF-Ad	bronchial
28	chr11:34104000-34124000	Strong transcription	Hela-S3	cervix
29	chr11:34104000-34124600	Strong transcription	K562	blood
30	chr11:34104000-34125600	Strong transcription	NH-A	brain
31	chr11:34105600-34124600	Strong transcription	Adipose Nuclei	Adipose
32	chr11:34107400-34125000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:34108000-34124000	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr11:34108000-34124800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:34108800-34125000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:34109800-34124600	Strong transcription	HSMMtube	muscle
37	chr11:34110600-34125000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:34110800-34123600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:34110800-34123800	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:34110800-34124000	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:34111000-34125000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr11:34111000-34125400	Strong transcription	HSMM	muscle
43	chr11:34111200-34123800	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr11:34111200-34126600	Weak transcription	Small Intestine	intestine
45	chr11:34111400-34123600	Strong transcription	Brain Cingulate Gyrus	brain
46	chr11:34111400-34123800	Strong transcription	Colon Smooth Muscle	Colon
47	chr11:34111400-34124400	Strong transcription	A549	lung
48	chr11:34111600-34124000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:34112600-34126400	Weak transcription	Right Atrium	heart
50	chr11:34116200-34124400	Strong transcription	Fetal Kidney	kidney

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