Variant report

Variant	rs547855294
Chromosome Location	chr9:3565515-3565516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892089	chr9:3290569-3578094	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv916259	chr9:3308176-4296711	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1028815	chr9:3319718-3584455	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv1022795	chr9:3436845-3744623	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv3343800	chr9:3559495-3616759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv2762783	chr9:3561910-3618770	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv892092	chr9:3565211-3687942	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3527400-3567600	Weak transcription	Ovary	ovary
2	chr9:3529000-3579000	Weak transcription	HSMMtube	muscle
3	chr9:3531000-3575800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr9:3531800-3579000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:3547600-3572800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:3549400-3570200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:3549800-3572800	Weak transcription	Right Ventricle	heart
8	chr9:3550000-3566000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:3550000-3593000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr9:3551000-3571200	Weak transcription	Thymus	Thymus
11	chr9:3554400-3576000	Weak transcription	Adipose Nuclei	Adipose
12	chr9:3554400-3576400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr9:3554400-3579400	Weak transcription	Left Ventricle	heart
14	chr9:3554600-3569400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:3554800-3578000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:3560800-3571000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr9:3560800-3571400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr9:3562800-3568000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:3563600-3566000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr9:3563800-3566000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr9:3563800-3567200	Weak transcription	Primary B cells from peripheral blood	blood
22	chr9:3563800-3576200	Weak transcription	Primary B cells from cord blood	blood
23	chr9:3563800-3578200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr9:3565200-3568400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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