Variant report

Variant	rs547859705
Chromosome Location	chr19:56134992-56134993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:56134460..56137185-chr19:56162633..56166165,3	K562	blood:
2	chr19:55994966..55997371-chr19:56133954..56136992,3	K562	blood:
3	chr19:56134733..56137004-chr19:56165358..56168098,3	MCF-7	breast:
4	chr19:56134501..56137412-chr19:56145689..56149345,6	K562	blood:
5	chr19:55969994..55973672-chr19:56134456..56137440,3	MCF-7	breast:
6	chr19:56123945..56128950-chr19:56130054..56135521,12	K562	blood:
7	chr19:55917750..55919374-chr19:56134333..56135966,2	K562	blood:
8	chr19:55950973..55953730-chr19:56134853..56137596,2	K562	blood:
9	chr19:56134500..56138557-chr19:56151822..56155582,4	K562	blood:
10	chr19:56134221..56137618-chr19:56162633..56168532,10	K562	blood:
11	chr19:56133602..56135847-chr19:56151330..56154007,2	MCF-7	breast:
12	chr19:56110415..56112373-chr19:56134518..56138349,4	MCF-7	breast:
13	chr19:55986860..55989470-chr19:56134046..56136997,2	K562	blood:
14	chr19:56116188..56118514-chr19:56134480..56137487,3	MCF-7	breast:
15	chr19:56109378..56114662-chr19:56134412..56139001,15	K562	blood:
16	chr19:56115235..56119649-chr19:56131831..56136050,11	K562	blood:
17	chr19:55918880..55921412-chr19:56134337..56137770,3	MCF-7	breast:
18	chr19:56131862..56136924-chr19:56144839..56148352,5	MCF-7	breast:
19	chr19:56132811..56137423-chr19:56151241..56156557,5	MCF-7	breast:
20	chr19:56133203..56138391-chr19:56150309..56156340,8	K562	blood:
21	chr19:56125033..56127900-chr19:56132851..56135429,4	MCF-7	breast:
22	chr19:56028711..56031331-chr19:56131776..56135542,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000179943	Chromatin interaction
ENSG00000171443	Chromatin interaction
ENSG00000197483	Chromatin interaction
ENSG00000173581	Chromatin interaction
ENSG00000063244	Chromatin interaction
ENSG00000171425	Chromatin interaction
ENSG00000187902	Chromatin interaction
ENSG00000213015	Chromatin interaction
ENSG00000108106	Chromatin interaction
ENSG00000261221	Chromatin interaction
ENSG00000269859	Chromatin interaction
ENSG00000063241	Chromatin interaction
ENSG00000090971	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912473	chr19:55874642-56145428	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
2	nsv912486	chr19:55977909-56145428	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv912487	chr19:55977909-56215184	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv912494	chr19:56026072-56215184	Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
5	nsv912496	chr19:56040051-56145428	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
6	nsv912497	chr19:56041848-56145428	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	nsv912498	chr19:56041848-56215184	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
8	nsv828643	chr19:56059280-56154823	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
9	nsv912500	chr19:56078722-56175515	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
10	nsv912501	chr19:56093365-56215184	Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
11	nsv912502	chr19:56099884-56138575	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
12	nsv428026	chr19:56130849-56423514	Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	82 gene(s)	inside rSNPs	diseases
13	esv3416031	chr19:56134790-56136988	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56118200-56135000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr19:56118400-56135200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr19:56118400-56135200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr19:56118400-56135200	Weak transcription	HUVEC	blood vessel
5	chr19:56118600-56135200	Weak transcription	Fetal Brain Male	brain
6	chr19:56121200-56135000	Weak transcription	NH-A	brain
7	chr19:56121600-56135800	Weak transcription	NHDF-Ad	bronchial
8	chr19:56122200-56135800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr19:56122800-56135000	Weak transcription	HSMM	muscle
10	chr19:56128400-56135600	Weak transcription	Small Intestine	intestine
11	chr19:56129000-56135000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr19:56129000-56135200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr19:56129200-56135000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr19:56129200-56135000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr19:56129200-56135000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr19:56129200-56135000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr19:56129200-56135000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr19:56129200-56135000	Weak transcription	Stomach Mucosa	stomach
19	chr19:56129200-56135400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr19:56129200-56135400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr19:56129200-56135400	Weak transcription	Colonic Mucosa	Colon
22	chr19:56129200-56135800	Weak transcription	Aorta	Aorta
23	chr19:56129200-56135800	Weak transcription	Brain Substantia Nigra	brain
24	chr19:56129400-56135000	Weak transcription	Osteobl	bone
25	chr19:56130600-56135200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr19:56131400-56135000	Weak transcription	Adipose Nuclei	Adipose
27	chr19:56132200-56135800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr19:56132400-56135000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr19:56132400-56135200	Weak transcription	Right Atrium	heart
30	chr19:56132600-56135000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr19:56132800-56135000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr19:56132800-56135000	Weak transcription	Brain Anterior Caudate	brain
33	chr19:56132800-56135200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr19:56132800-56135200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr19:56132800-56135200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr19:56132800-56135200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr19:56132800-56135200	Weak transcription	Psoas Muscle	Psoas
38	chr19:56133000-56135000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr19:56133000-56135000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr19:56133000-56135000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr19:56133000-56135000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr19:56133000-56135000	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr19:56133000-56135000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr19:56133000-56135000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr19:56133000-56135000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr19:56133000-56135200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr19:56133000-56135200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr19:56133000-56135200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr19:56133000-56135200	Weak transcription	HMEC	breast
50	chr19:56133400-56135000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links