Variant report

Variant	rs547869981
Chromosome Location	chr10:112724075-112724076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112677176..112680951-chr10:112720651..112724250,5	K562	blood:

Variant related genes	Relation type
ENSG00000108061	Chromatin interaction
ENSG00000214413	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1035602	chr10:112636053-112781413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1051327	chr10:112650316-112772917	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv540774	chr10:112650316-112772917	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1047865	chr10:112660427-112730573	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1048809	chr10:112683822-112781413	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1042020	chr10:112686323-112795159	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv948186	chr10:112723969-112725278	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112682000-112732400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:112692600-112732400	Weak transcription	Fetal Intestine Large	intestine
3	chr10:112697200-112740200	Weak transcription	Thymus	Thymus
4	chr10:112697200-112745400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:112700600-112764000	Weak transcription	Placenta	Placenta
6	chr10:112701200-112726800	Weak transcription	Dnd41	blood
7	chr10:112702400-112754800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:112703800-112724200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr10:112703800-112725800	Weak transcription	HUVEC	blood vessel
10	chr10:112703800-112729000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:112705200-112789800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:112705800-112725400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:112707200-112724200	Weak transcription	Gastric	stomach
14	chr10:112707200-112724400	Weak transcription	Aorta	Aorta
15	chr10:112707200-112725400	Weak transcription	Osteobl	bone
16	chr10:112707200-112726200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:112707200-112732200	Weak transcription	Pancreas	Pancrea
18	chr10:112707200-112732200	Weak transcription	NHEK	skin
19	chr10:112707200-112732400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:112707200-112737600	Weak transcription	Psoas Muscle	Psoas
21	chr10:112707200-112738800	Weak transcription	NH-A	brain
22	chr10:112707200-112755000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:112707200-112784200	Weak transcription	Left Ventricle	heart
24	chr10:112709000-112724400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr10:112709000-112760000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:112710000-112736400	Weak transcription	HSMM	muscle
27	chr10:112711800-112735600	Weak transcription	Fetal Intestine Small	intestine
28	chr10:112712200-112725400	Weak transcription	NHLF	lung
29	chr10:112712200-112732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:112712600-112724400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:112712600-112726400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:112712600-112732400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr10:112712600-112732400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr10:112712600-112732400	Weak transcription	Esophagus	oesophagus
35	chr10:112712600-112737200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:112712600-112737600	Weak transcription	HSMMtube	muscle
37	chr10:112712600-112737800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:112712600-112751200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:112712600-112755000	Weak transcription	Fetal Thymus	thymus
40	chr10:112712800-112736600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:112712800-112738000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:112712800-112751600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:112713200-112724200	Weak transcription	Primary T cells from cord blood	blood
44	chr10:112713200-112727200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:112715000-112724200	Weak transcription	Right Atrium	heart
46	chr10:112715200-112724200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr10:112719400-112760800	Weak transcription	Fetal Muscle Leg	muscle
48	chr10:112719600-112732000	Weak transcription	A549	lung
49	chr10:112719800-112735800	Weak transcription	Fetal Stomach	stomach
50	chr10:112719800-112737600	Weak transcription	Rectal Smooth Muscle	rectum

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