Variant report

Variant	rs547905519
Chromosome Location	chr18:45504814-45504815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv978736	chr18:45504781-45511894	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45501800-45510200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:45502200-45510000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr18:45502400-45505000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr18:45502400-45505800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr18:45502400-45505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr18:45502400-45507600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr18:45502600-45505200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr18:45502600-45507200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr18:45502600-45508000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr18:45503000-45505200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr18:45503000-45505200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr18:45503000-45506400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr18:45503200-45505200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr18:45503400-45505200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr18:45503400-45505600	Weak transcription	Placenta	Placenta
16	chr18:45503600-45505200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr18:45504800-45505000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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