Variant report

Variant	rs547907330
Chromosome Location	chr3:136676788-136676789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr3:136676534-136677039	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr3:136676334-136677059	MCF10A-Er-Src	breast:	n/a	chr3:136676620-136676629
3	MAZ	chr3:136676533-136676953	Hela-S3	cervix:	n/a	n/a
4	TAF1	chr3:136676594-136676977	Hela-S3	cervix:	n/a	n/a
5	PML	chr3:136676650-136677129	K562	blood:	n/a	n/a
6	E2F6	chr3:136676620-136677043	H1-hESC	embryonic stem cell:	n/a	n/a
7	MAX	chr3:136676588-136676991	K562	blood:	n/a	n/a
8	POLR2A	chr3:136676715-136676915	GM12878	blood:	n/a	n/a
9	STAT3	chr3:136676451-136677158	MCF10A-Er-Src	breast:	n/a	chr3:136676611-136676619
10	SP1	chr3:136676375-136677139	HCT-116	colon:	n/a	chr3:136676611-136676632
11	POLR2A	chr3:136675938-136679061	MCF10A-Er-Src	breast:	n/a	n/a
12	RFX5	chr3:136676433-136676972	Hela-S3	cervix:	n/a	chr3:136676621-136676630
13	USF2	chr3:136676529-136676896	Hela-S3	cervix:	n/a	n/a
14	SMC3	chr3:136676563-136676994	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr3:136676645-136676906	K562	blood:	n/a	n/a
16	MXI1	chr3:136676576-136676963	Hela-S3	cervix:	n/a	n/a
17	CEBPB	chr3:136676571-136676919	K562	blood:	n/a	chr3:136676622-136676630
18	POLR2A	chr3:136676536-136676991	Hela-S3	cervix:	n/a	n/a
19	UBTF	chr3:136676612-136676840	K562	blood:	n/a	n/a
20	TBL1XR1	chr3:136676533-136677047	K562	blood:	n/a	n/a
21	HEY1	chr3:136676666-136677030	K562	blood:	n/a	n/a
22	POLR2A	chr3:136676532-136678102	MCF10A-Er-Src	breast:	n/a	n/a
23	FOS	chr3:136676527-136677142	MCF10A-Er-Src	breast:	n/a	chr3:136676620-136676629
24	TBP	chr3:136676509-136676856	K562	blood:	n/a	n/a
25	CEBPB	chr3:136676563-136676957	K562	blood:	n/a	chr3:136676622-136676630
26	CEBPB	chr3:136676498-136677863	Hela-S3	cervix:	n/a	chr3:136676622-136676630
27	POLR2A	chr3:136676542-136677052	Hela-S3	cervix:	n/a	n/a
28	E2F6	chr3:136676662-136676889	H1-hESC	embryonic stem cell:	n/a	n/a
29	TCF7L2	chr3:136676578-136676922	Hela-S3	cervix:	n/a	n/a
30	RAD21	chr3:136676518-136676966	Hela-S3	cervix:	n/a	n/a
31	POLR2A	chr3:136676550-136676950	Hela-S3	cervix:	n/a	n/a
32	BRCA1	chr3:136676499-136677086	Hela-S3	cervix:	n/a	n/a
33	POLR2A	chr3:136676098-136677906	K562	blood:	n/a	n/a
34	POLR2A	chr3:136676680-136676957	K562	blood:	n/a	n/a
35	ATF3	chr3:136676420-136677089	HCT-116	colon:	n/a	n/a
36	STAT3	chr3:136676522-136677010	MCF10A-Er-Src	breast:	n/a	chr3:136676611-136676619
37	IRF3	chr3:136676606-136677276	Hela-S3	cervix:	n/a	chr3:136677266-136677276
38	STAT3	chr3:136676215-136676879	MCF10A-Er-Src	breast:	n/a	chr3:136676611-136676619
39	JUND	chr3:136676517-136677047	K562	blood:	n/a	chr3:136676620-136676629
40	RCOR1	chr3:136676488-136677057	K562	blood:	n/a	n/a
41	ZC3H11A	chr3:136676690-136676890	K562	blood:	n/a	n/a
42	EP300	chr3:136676489-136677973	Hela-S3	cervix:	n/a	n/a
43	MYC	chr3:136676516-136676981	K562	blood:	n/a	n/a
44	TBP	chr3:136676395-136677172	Hela-S3	cervix:	n/a	n/a
45	CEBPB	chr3:136676572-136676939	H1-hESC	embryonic stem cell:	n/a	chr3:136676622-136676630
46	GTF2F1	chr3:136676445-136677045	Hela-S3	cervix:	n/a	n/a
47	MAX	chr3:136676525-136677051	Hela-S3	cervix:	n/a	n/a
48	UBTF	chr3:136676546-136677016	K562	blood:	n/a	n/a
49	POLR2A	chr3:136676462-136677039	HCT-116	colon:	n/a	n/a
50	ZMIZ1	chr3:136676653-136676985	K562	blood:	n/a	n/a

Variant related genes	Relation type
IL20RB	TF binding region

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877534	chr3:136676303-136765859	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136656400-136681400	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:136658600-136679400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:136662800-136678800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:136665200-136676800	Weak transcription	Aorta	Aorta
5	chr3:136665200-136680200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:136665400-136679000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:136665400-136680200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr3:136665400-136680200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:136665600-136680000	Weak transcription	Dnd41	blood
10	chr3:136665600-136689400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr3:136666600-136680400	Weak transcription	Left Ventricle	heart
12	chr3:136669400-136680200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:136670600-136676800	Enhancers	HMEC	breast
14	chr3:136673200-136676800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:136673800-136680400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr3:136674000-136680200	Weak transcription	Fetal Thymus	thymus
17	chr3:136674200-136679800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:136674200-136680200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:136674400-136677600	Weak transcription	Thymus	Thymus
20	chr3:136674600-136677000	Weak transcription	Primary T cells from cord blood	blood
21	chr3:136674600-136680000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:136674800-136676800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:136674800-136677000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:136674800-136680200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:136675000-136679800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr3:136675200-136677000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr3:136675400-136676800	Enhancers	NHDF-Ad	bronchial
28	chr3:136675400-136677000	Enhancers	NHLF	lung
29	chr3:136675400-136677800	Weak transcription	NH-A	brain
30	chr3:136675600-136677600	Weak transcription	Esophagus	oesophagus
31	chr3:136675600-136678200	Enhancers	A549	lung
32	chr3:136675600-136679400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:136675600-136679600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr3:136675600-136679800	Weak transcription	Osteobl	bone
35	chr3:136675600-136681200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:136675800-136679600	Weak transcription	HSMM	muscle
37	chr3:136676000-136678600	Weak transcription	Small Intestine	intestine
38	chr3:136676200-136679600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:136676200-136680200	Weak transcription	HepG2	liver
40	chr3:136676400-136677800	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr3:136676400-136679400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr3:136676600-136676800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr3:136676600-136676800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:136676600-136676800	Enhancers	Adipose Nuclei	Adipose
45	chr3:136676600-136676800	Enhancers	Psoas Muscle	Psoas
46	chr3:136676600-136676800	Enhancers	HUVEC	blood vessel
47	chr3:136676600-136677000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr3:136676600-136677000	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr3:136676600-136677000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:136676600-136677200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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