Variant report

Variant	rs547927
Chromosome Location	chr9:18708788-18708789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10963666	1.00[CEU][hapmap]
rs12236787	1.00[EUR][1000 genomes]
rs2487477	0.93[YRI][hapmap]
rs2507117	0.80[ASN][1000 genomes]
rs2570568	0.80[ASN][1000 genomes]
rs2779126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs476460	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs482009	0.85[CHB][hapmap];0.86[CHD][hapmap];0.85[ASN][1000 genomes]
rs487882	0.80[ASN][1000 genomes]
rs518607	0.81[CHD][hapmap]
rs776760	1.00[YRI][hapmap]
rs776761	0.93[YRI][hapmap]
rs776763	0.93[YRI][hapmap]
rs776764	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv892691	chr9:18519699-18805483	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv831523	chr9:18592398-18753451	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
10	nsv892694	chr9:18599029-18767830	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
11	nsv613726	chr9:18676163-18709330	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
12	nsv892697	chr9:18700566-18767830	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18675800-18710000	Strong transcription	HSMM	muscle
2	chr9:18690000-18714200	Weak transcription	HUVEC	blood vessel
3	chr9:18702600-18708800	Enhancers	Fetal Lung	lung
4	chr9:18704400-18710600	Genic enhancers	NHDF-Ad	bronchial
5	chr9:18705800-18711200	Strong transcription	Muscle Satellite Cultured Cells	--
6	chr9:18706200-18708800	Enhancers	Stomach Smooth Muscle	stomach
7	chr9:18706200-18721200	Weak transcription	Aorta	Aorta
8	chr9:18707200-18710000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:18707200-18720800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:18707600-18709800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:18707600-18709800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:18707600-18709800	Weak transcription	HSMMtube	muscle
13	chr9:18707600-18710000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:18707600-18711200	Enhancers	Fetal Heart	heart
15	chr9:18707800-18710000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:18708000-18711000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:18708000-18722400	Weak transcription	NHLF	lung
18	chr9:18708200-18709800	Weak transcription	Adipose Nuclei	Adipose
19	chr9:18708200-18709800	Weak transcription	NH-A	brain
20	chr9:18708600-18708800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:18708600-18708800	Enhancers	Fetal Kidney	kidney
22	chr9:18708600-18709600	Strong transcription	Osteobl	bone
23	chr9:18708600-18709800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:18708600-18718400	Weak transcription	Fetal Stomach	stomach
25	chr9:18708600-18726400	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links