Variant report

Variant	rs547995489
Chromosome Location	chr9:110108049-110108050
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110106380..110109788-chr9:110111716..110114487,3	MCF-7	breast:
2	chr9:110107726..110110330-chr9:110112564..110114575,2	MCF-7	breast:
3	chr9:110102299..110105687-chr9:110106035..110108571,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1042965	chr9:110100745-110126661	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893699	chr9:110107862-110188197	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110097200-110113800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:110100600-110112800	Weak transcription	Esophagus	oesophagus
3	chr9:110101400-110111200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:110101600-110108600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:110101600-110111200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:110103400-110110400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:110103400-110111200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:110103600-110113600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:110103600-110113800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:110103600-110114000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:110103800-110110000	Weak transcription	Pancreas	Pancrea
12	chr9:110103800-110111200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:110105200-110109400	Weak transcription	HSMMtube	muscle
14	chr9:110105400-110110000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:110105600-110113600	Weak transcription	HMEC	breast
16	chr9:110106200-110111400	Weak transcription	NHLF	lung
17	chr9:110106200-110114000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:110107200-110108200	Enhancers	Primary T cells from cord blood	blood
19	chr9:110107200-110109800	Weak transcription	Psoas Muscle	Psoas
20	chr9:110107400-110108200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:110107400-110109400	Weak transcription	HSMM	muscle
22	chr9:110107600-110108200	Enhancers	Adipose Nuclei	Adipose
23	chr9:110107600-110108200	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr9:110107600-110108200	Enhancers	Osteobl	bone
25	chr9:110107600-110111000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr9:110107800-110108200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:110107800-110108200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr9:110107800-110108200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr9:110108000-110110400	Weak transcription	Fetal Muscle Leg	muscle
30	chr9:110108000-110111000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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