Variant report

Variant	rs548014425
Chromosome Location	chr8:6262811-6262812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:6262542-6265893	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr8:6262610-6265080	GM12878	blood:	n/a	n/a
3	POLR2A	chr8:6262506-6264338	K562	blood:	n/a	n/a
4	POLR2A	chr8:6262762-6265270	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr8:6262506-6265420	GM12878	blood:	n/a	n/a
6	POLR2A	chr8:6262772-6265245	SK-N-MC	brain:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:6260700..6262859-chr8:6263480..6266725,3	K562	blood:
2	chr8:6245309..6247015-chr8:6262084..6263587,2	MCF-7	breast:
3	chr8:6262444..6265412-chr8:6565205..6567179,2	K562	blood:
4	chr8:6257664..6260408-chr8:6262144..6263812,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANGPT2-2	chr8:6262449-6263892	XLOC_006985
2	lnc-ANGPT2-2	chr8:6262438-6264096	NONHSAT124771

No data

Variant related genes	Relation type
MCPH1	TF binding region
ENSG00000246089	Chromatin interaction
ENSG00000249898	Chromatin interaction
ENSG00000147316	Chromatin interaction
ENSG00000155189	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890034	chr8:5926632-6427868	Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1021175	chr8:5965453-6880364	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1018782	chr8:5984032-6284373	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1027682	chr8:6018123-6920312	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv949501	chr8:6081704-6303511	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv890041	chr8:6084048-6274963	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3506199	chr8:6116693-6536592	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	esv3506200	chr8:6116693-6536592	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1024103	chr8:6124125-6303511	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1026950	chr8:6127991-6303511	Strong transcription Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1025734	chr8:6128828-6303511	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1022940	chr8:6128828-6304814	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv527005	chr8:6129051-6287170	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv1028552	chr8:6129221-6303511	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv1021800	chr8:6144798-6286635	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv1026004	chr8:6144798-6307692	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv539431	chr8:6144798-6307692	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv890052	chr8:6171324-6263083	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv933107	chr8:6173244-6312807	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv482828	chr8:6182711-6355710	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	nsv1018882	chr8:6204857-6289937	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
22	nsv890055	chr8:6237397-6351252	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
23	nsv531468	chr8:6248682-6309194	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
24	nsv933282	chr8:6261036-6440592	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
25	nsv1033935	chr8:6262180-6275753	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:6256400-6263200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:6256600-6263000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:6256800-6263000	Weak transcription	HSMM	muscle
4	chr8:6258600-6263200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:6260400-6263200	Weak transcription	Pancreas	Pancrea
6	chr8:6260600-6263000	Weak transcription	Thymus	Thymus
7	chr8:6261400-6263000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:6262000-6265200	Active TSS	GM12878-XiMat	blood
9	chr8:6262200-6263000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:6262200-6263000	Enhancers	Fetal Lung	lung
11	chr8:6262200-6265400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:6262400-6263000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:6262400-6263000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr8:6262400-6263000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:6262400-6263000	Enhancers	Adipose Nuclei	Adipose
16	chr8:6262400-6263000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr8:6262400-6263200	Flanking Active TSS	HMEC	breast
18	chr8:6262400-6263600	Flanking Active TSS	Dnd41	blood
19	chr8:6262600-6263000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:6262600-6263000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:6262600-6263000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:6262600-6263000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr8:6262600-6263000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr8:6262600-6263000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr8:6262600-6263000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr8:6262600-6263000	Enhancers	Fetal Brain Female	brain
27	chr8:6262600-6263200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr8:6262600-6263600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:6262600-6265200	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr8:6262800-6263000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr8:6262800-6263000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:6262800-6263000	Active TSS	Primary B cells from cord blood	blood
33	chr8:6262800-6263000	Active TSS	Primary T cells from cord blood	blood
34	chr8:6262800-6263000	Enhancers	Primary T cells fromperipheralblood	blood
35	chr8:6262800-6263000	Enhancers	Primary hematopoietic stem cells	blood
36	chr8:6262800-6263000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr8:6262800-6263000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr8:6262800-6263000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr8:6262800-6263000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr8:6262800-6263000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr8:6262800-6263000	Enhancers	Liver	Liver
42	chr8:6262800-6263000	Enhancers	Brain Hippocampus Middle	brain
43	chr8:6262800-6263000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr8:6262800-6263000	Enhancers	Colon Smooth Muscle	Colon
45	chr8:6262800-6263000	Enhancers	Duodenum Mucosa	Duodenum
46	chr8:6262800-6263000	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr8:6262800-6263000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr8:6262800-6263000	Enhancers	Fetal Brain Male	brain
49	chr8:6262800-6263000	Enhancers	Fetal Intestine Large	intestine
50	chr8:6262800-6263000	Enhancers	Fetal Intestine Small	intestine

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