Variant report

Variant	rs548014932
Chromosome Location	chr14:31812861-31812862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31675418..31678639-chr14:31811864..31816181,5	MCF-7	breast:
2	chr14:31811249..31813398-chr14:31813760..31815314,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000092148	Chromatin interaction
ENSG00000129493	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901589	chr14:31768231-31944723	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3356815	chr14:31812826-31815374	Strong transcription Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31771000-31888800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:31772400-31825200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr14:31782200-31813000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:31782200-31814000	Weak transcription	Fetal Kidney	kidney
5	chr14:31782200-31875200	Weak transcription	Gastric	stomach
6	chr14:31782400-31827000	Weak transcription	Aorta	Aorta
7	chr14:31799600-31827000	Weak transcription	Right Ventricle	heart
8	chr14:31799800-31814400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr14:31799800-31815600	Weak transcription	Colonic Mucosa	Colon
10	chr14:31799800-31829600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:31799800-31866800	Weak transcription	Esophagus	oesophagus
12	chr14:31800200-31839800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr14:31800400-31838200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr14:31801200-31823400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr14:31801200-31883800	Weak transcription	Small Intestine	intestine
16	chr14:31801400-31862800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr14:31801400-31875600	Weak transcription	Brain Germinal Matrix	brain
18	chr14:31801600-31824000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr14:31801600-31872400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:31801800-31824400	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr14:31801800-31862600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:31802400-31825000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr14:31802400-31827200	Weak transcription	Brain Substantia Nigra	brain
24	chr14:31802400-31842800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:31802600-31825000	Weak transcription	GM12878-XiMat	blood
26	chr14:31802800-31872000	Weak transcription	Fetal Brain Male	brain
27	chr14:31803200-31814200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr14:31803400-31817600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr14:31803600-31813000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr14:31803600-31813600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr14:31803600-31825000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr14:31803600-31833000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr14:31803600-31872600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr14:31803800-31843600	Weak transcription	A549	lung
35	chr14:31803800-31852200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr14:31804000-31825000	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr14:31805600-31816400	Weak transcription	Fetal Stomach	stomach
38	chr14:31805600-31825000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr14:31805600-31851800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:31806000-31819600	Strong transcription	HSMM	muscle
41	chr14:31806200-31850800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr14:31806400-31825400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:31806400-31829200	Strong transcription	Placenta	Placenta
44	chr14:31806600-31826600	Weak transcription	NHEK	skin
45	chr14:31806600-31826800	Weak transcription	Hela-S3	cervix
46	chr14:31807000-31815800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr14:31807400-31825400	Weak transcription	Psoas Muscle	Psoas
48	chr14:31808000-31872600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr14:31808600-31827000	Weak transcription	Lung	lung
50	chr14:31808800-31818200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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