Variant report

Variant	rs548021639
Chromosome Location	chr6:133913628-133913629
allele	-/AAC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133911200-133914000	Enhancers	HMEC	breast
2	chr6:133911400-133913800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:133911400-133913800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:133911600-133914000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:133912000-133913800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:133912000-133913800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:133912400-133913800	Weak transcription	Fetal Stomach	stomach
8	chr6:133912400-133915800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:133912400-133925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:133912600-133915400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:133912600-133916800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:133912800-133913800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:133912800-133915800	Weak transcription	NHDF-Ad	bronchial
14	chr6:133913000-133914800	Enhancers	A549	lung
15	chr6:133913000-133916800	Weak transcription	NHLF	lung
16	chr6:133913200-133914000	Enhancers	Hela-S3	cervix
17	chr6:133913400-133917400	Enhancers	Fetal Lung	lung
18	chr6:133913600-133915400	Weak transcription	Osteobl	bone
19	chr6:133913600-133916200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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