The 2.0 version of rSNPBase

Variant report

Variant rs548065901
Chromosome Location chr6:82470004-82470005
allele -/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:82463800-82476000 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr6:82463800-82477000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr6:82464000-82477000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr6:82464200-82470600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
5 chr6:82464200-82472800 Weak transcription Placenta Amnion Placenta Amnion
6 chr6:82464400-82475800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr6:82464600-82471800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
8 chr6:82465200-82472000 Weak transcription Primary hematopoietic stem cells blood
9 chr6:82465600-82470600 Weak transcription Fetal Stomach stomach
10 chr6:82465600-82470600 Weak transcription NHDF-Ad bronchial
11 chr6:82467200-82474000 Weak transcription Primary hematopoietic stem cells short term culture blood
12 chr6:82467400-82477000 Weak transcription iPS-20b Cell Line embryonic stem cell
13 chr6:82467800-82476200 Weak transcription HUES6 Cell Line embryonic stem cell
14 chr6:82468000-82476000 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr6:82468400-82471800 Weak transcription Primary monocytes fromperipheralblood blood
16 chr6:82468800-82472000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr6:82468800-82472000 Weak transcription Monocytes-CD14+_RO01746 blood
18 chr6:82468800-82472200 Weak transcription Primary neutrophils fromperipheralblood blood
19 chr6:82469000-82471000 Enhancers HepG2 liver
20 chr6:82469000-82472200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr6:82469000-82472200 Enhancers NHEK skin
22 chr6:82469200-82472400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr6:82469200-82472600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr6:82469200-82472600 Enhancers HMEC breast
25 chr6:82469200-82473200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr6:82469400-82470600 Weak transcription Small Intestine intestine
27 chr6:82469400-82470800 Enhancers Fetal Intestine Large intestine
28 chr6:82469600-82470400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
29 chr6:82469600-82470600 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr6:82469600-82472600 Enhancers Muscle Satellite Cultured Cells --
31 chr6:82469600-82472800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr6:82469600-82472800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr6:82469600-82473200 Enhancers Osteobl bone
34 chr6:82469800-82470400 Weak transcription HSMM muscle
35 chr6:82469800-82470600 Weak transcription Stomach Mucosa stomach
36 chr6:82469800-82470600 Weak transcription A549 lung
37 chr6:82469800-82472000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr6:82469800-82472000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr6:82469800-82473400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
40 chr6:82469800-82475600 Weak transcription Fetal Intestine Small intestine
41 chr6:82469800-82476200 Weak transcription ES-I3 Cell Line embryonic stem cell
42 chr6:82470000-82470800 Weak transcription NHLF lung
43 chr6:82470000-82476200 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015