Variant report

Variant	rs548139405
Chromosome Location	chr9:95485165-95485166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95471128..95473900-chr9:95482099..95486004,3	K562	blood:
2	chr9:95476880..95479198-chr9:95481003..95486701,5	MCF-7	breast:
3	chr9:95483929..95486078-chr9:95495007..95497382,2	MCF-7	breast:
4	chr9:95483115..95485698-chr9:95490750..95492999,2	MCF-7	breast:
5	chr9:95431172..95435271-chr9:95479982..95485530,5	MCF-7	breast:
6	chr9:95481018..95487899-chr9:95523684..95529726,11	MCF-7	breast:
7	chr9:95478967..95480726-chr9:95484940..95487437,2	MCF-7	breast:
8	chr9:95484940..95486655-chr9:95500825..95503723,2	K562	blood:
9	chr9:95474084..95476947-chr9:95483960..95486905,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv999632	chr9:95483885-95491267	Genic enhancers Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95471000-95485400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:95471000-95485600	Strong transcription	Fetal Thymus	thymus
3	chr9:95471000-95493000	Strong transcription	Thymus	Thymus
4	chr9:95471200-95485200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:95471200-95485200	Strong transcription	Fetal Brain Female	brain
6	chr9:95471200-95486000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:95471400-95485200	Strong transcription	Muscle Satellite Cultured Cells	--
8	chr9:95471400-95485400	Strong transcription	Brain Germinal Matrix	brain
9	chr9:95471400-95485400	Strong transcription	Gastric	stomach
10	chr9:95471400-95485600	Strong transcription	Aorta	Aorta
11	chr9:95471400-95487000	Strong transcription	Fetal Muscle Leg	muscle
12	chr9:95471400-95489000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr9:95471600-95485200	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:95471600-95485400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:95471600-95489000	Strong transcription	Fetal Stomach	stomach
16	chr9:95471800-95485400	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:95471800-95486000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:95471800-95487600	Strong transcription	Stomach Smooth Muscle	stomach
19	chr9:95471800-95492400	Strong transcription	Dnd41	blood
20	chr9:95472000-95485200	Strong transcription	Lung	lung
21	chr9:95472000-95485400	Strong transcription	H9 Cell Line	embryonic stem cell
22	chr9:95472000-95485400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:95472000-95485600	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr9:95472000-95489600	Strong transcription	Fetal Intestine Small	intestine
25	chr9:95472200-95485200	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr9:95472400-95485200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:95472600-95485200	Strong transcription	Brain Cingulate Gyrus	brain
28	chr9:95472800-95485400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr9:95473000-95485400	Strong transcription	NHLF	lung
30	chr9:95474800-95485800	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr9:95474800-95486200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:95475000-95491600	Strong transcription	Primary T cells from cord blood	blood
33	chr9:95475000-95492200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr9:95475200-95485200	Strong transcription	Pancreas	Pancrea
35	chr9:95475400-95486200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr9:95475600-95485400	Strong transcription	Rectal Smooth Muscle	rectum
37	chr9:95475600-95491800	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr9:95475600-95492000	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr9:95475600-95499200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr9:95475800-95492000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr9:95475800-95492200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr9:95476000-95489200	Strong transcription	Primary hematopoietic stem cells	blood
43	chr9:95476400-95485600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr9:95476400-95489000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr9:95476400-95489400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr9:95476600-95489000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:95477800-95486800	Weak transcription	Right Atrium	heart
48	chr9:95478600-95489200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr9:95478600-95490400	Genic enhancers	Primary B cells from peripheral blood	blood
50	chr9:95478800-95485600	Strong transcription	Adipose Nuclei	Adipose

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