Variant report

Variant	rs548222192
Chromosome Location	chr14:35811999-35812000
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:35760612..35764048-chr14:35809630..35812978,4	MCF-7	breast:
2	chr1:235242161..235244380-chr14:35810854..35813654,2	MCF-7	breast:
3	chr14:35757408..35763930-chr14:35809319..35813404,11	MCF-7	breast:
4	chr14:35589885..35593973-chr14:35809162..35812137,5	MCF-7	breast:
5	chr14:35515127..35516753-chr14:35810234..35812265,2	MCF-7	breast:
6	chr14:35681682..35685352-chr14:35808762..35812906,3	MCF-7	breast:
7	chr14:35772058..35774272-chr14:35810527..35812254,2	MCF-7	breast:
8	chr14:35698922..35700571-chr14:35810245..35812248,2	MCF-7	breast:
9	chr14:35700471..35702762-chr14:35811850..35814628,2	MCF-7	breast:
10	chr14:35804902..35807934-chr14:35810651..35813744,3	K562	blood:
11	chr14:35774042..35776362-chr14:35810358..35812429,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NFKBIA-4	chr14:35811376-35812101	l_964_chr14:35808028-35812101_thyroid

No data

Variant related genes	Relation type
ENSG00000100890	Chromatin interaction
ENSG00000100902	Chromatin interaction
ENSG00000092020	Chromatin interaction
ENSG00000151327	Chromatin interaction
ENSG00000265530	Chromatin interaction
ENSG00000258790	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
5	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
6	nsv456205	chr14:35772940-35826370	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv564318	chr14:35772940-35826370	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	esv1829386	chr14:35789740-35845927	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv518090	chr14:35802483-35840241	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	esv3336602	chr14:35811677-35812030	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35800000-35815000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr14:35800600-35814400	Enhancers	Placenta	Placenta
3	chr14:35800800-35812200	Enhancers	Fetal Thymus	thymus
4	chr14:35800800-35813800	Enhancers	Lung	lung
5	chr14:35805800-35821000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:35806200-35812400	Enhancers	Ovary	ovary
7	chr14:35806800-35816200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:35806800-35816600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:35807400-35816600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:35808000-35813800	Enhancers	Spleen	Spleen
11	chr14:35808200-35814400	Enhancers	Primary hematopoietic stem cells	blood
12	chr14:35808400-35812000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr14:35808400-35812200	Enhancers	Fetal Intestine Large	intestine
14	chr14:35808400-35812200	Enhancers	Fetal Stomach	stomach
15	chr14:35808600-35812000	Enhancers	Primary T cells from cord blood	blood
16	chr14:35808800-35812000	Enhancers	Small Intestine	intestine
17	chr14:35808800-35812200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr14:35808800-35812200	Enhancers	Pancreas	Pancrea
19	chr14:35809000-35813200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:35809000-35813800	Enhancers	Fetal Muscle Leg	muscle
21	chr14:35809400-35814400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr14:35809800-35812000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr14:35810000-35812000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:35810000-35812200	Enhancers	Fetal Heart	heart
25	chr14:35810000-35812200	Enhancers	NHLF	lung
26	chr14:35810000-35812400	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr14:35810200-35812000	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr14:35810200-35812000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr14:35810200-35812000	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr14:35810200-35812000	Flanking Active TSS	Hela-S3	cervix
31	chr14:35810200-35812000	Enhancers	HMEC	breast
32	chr14:35810200-35812200	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr14:35810200-35813600	Enhancers	Fetal Intestine Small	intestine
34	chr14:35810400-35812000	Enhancers	Thymus	Thymus
35	chr14:35810400-35812200	Flanking Bivalent TSS/Enh	HepG2	liver
36	chr14:35810600-35812000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:35810600-35812000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr14:35810600-35812000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr14:35810600-35812000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr14:35810600-35812000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
41	chr14:35810600-35812200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr14:35810600-35812200	Enhancers	Placenta Amnion	Placenta Amnion
43	chr14:35810600-35812200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr14:35810600-35812200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr14:35810600-35813600	Weak transcription	GM12878-XiMat	blood
46	chr14:35810800-35812000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr14:35810800-35812000	Enhancers	Primary T cells fromperipheralblood	blood
48	chr14:35810800-35812000	Flanking Active TSS	Osteobl	bone
49	chr14:35810800-35812400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:35811000-35812000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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