Variant report

Variant	rs548230745
Chromosome Location	chr2:205490114-205490115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875722	chr2:205462099-205572718	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875723	chr2:205489653-205612846	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205477000-205491800	Weak transcription	Fetal Lung	lung
2	chr2:205481200-205493600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:205481400-205501000	Weak transcription	Aorta	Aorta
4	chr2:205481600-205494200	Weak transcription	Fetal Brain Male	brain
5	chr2:205482200-205493800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr2:205484000-205493000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:205484000-205493800	Weak transcription	HSMM	muscle
8	chr2:205486000-205499200	Weak transcription	Fetal Intestine Small	intestine
9	chr2:205486800-205490200	Weak transcription	Colon Smooth Muscle	Colon
10	chr2:205488600-205494000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:205490000-205490200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:205490000-205490200	Enhancers	Gastric	stomach
13	chr2:205490000-205490200	Enhancers	Left Ventricle	heart
14	chr2:205490000-205490200	Enhancers	Ovary	ovary
15	chr2:205490000-205490600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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