Variant report

Variant	rs548235884
Chromosome Location	chr12:26274663-26274664
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:17)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:17 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr12:26274379-26274726	H1-hESC	embryonic stem cell:	n/a	n/a
2	SPI1	chr12:26274465-26275054	GM12878	blood:	n/a	n/a
3	POLR2A	chr12:26274618-26275005	H1-neurons	neurons:	n/a	n/a
4	SPI1	chr12:26274509-26275113	HL-60	blood:	n/a	n/a
5	MAX	chr12:26274407-26274762	H1-hESC	embryonic stem cell:	n/a	n/a
6	SPI1	chr12:26274609-26275058	GM12891	blood:	n/a	n/a
7	SUZ12	chr12:26274316-26278522	NT2-D1	testis:	n/a	n/a
8	E2F6	chr12:26274291-26274853	H1-hESC	embryonic stem cell:	n/a	n/a
9	SPI1	chr12:26274631-26275047	GM12891	blood:	n/a	n/a
10	MAX	chr12:26274332-26274758	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr12:26274284-26275147	H1-neurons	neurons:	n/a	n/a
12	POLR2A	chr12:26274383-26274707	U87	brain:	n/a	n/a
13	POLR2A	chr12:26274154-26275369	PANC-1	pancreas:	n/a	n/a
14	SPI1	chr12:26274629-26275082	HL-60	blood:	n/a	n/a
15	SIN3A	chr12:26274362-26275012	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr12:26274089-26279927	PANC-1	pancreas:	n/a	n/a
17	POLR2A	chr12:26274226-26275245	U87	brain:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26274388..26277209-chr12:26277264..26280315,5	K562	blood:

No data

Variant related genes	Relation type
SSPN	TF binding region
ENSG00000256894	Chromatin interaction
ENSG00000123095	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898932	chr12:26262137-26283482	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv898933	chr12:26262137-26285006	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv3407309	chr12:26274110-26277058	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3381594	chr12:26274535-26276833	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26267400-26274800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:26267800-26275000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr12:26268000-26274800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:26268000-26275000	Weak transcription	Hela-S3	cervix
5	chr12:26269600-26274800	Weak transcription	Left Ventricle	heart
6	chr12:26272200-26280000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:26272600-26274800	Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr12:26272800-26276800	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:26273000-26280000	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr12:26273400-26275000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr12:26273400-26280000	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr12:26273400-26280000	Active TSS	Right Atrium	heart
13	chr12:26273600-26275000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr12:26273600-26275000	Flanking Active TSS	Brain Anterior Caudate	brain
15	chr12:26273600-26276000	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr12:26273600-26279800	Active TSS	Psoas Muscle	Psoas
17	chr12:26273600-26280000	Active TSS	Brain Substantia Nigra	brain
18	chr12:26273800-26275000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
19	chr12:26273800-26275000	Weak transcription	Esophagus	oesophagus
20	chr12:26273800-26275000	Flanking Active TSS	HMEC	breast
21	chr12:26273800-26275800	Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr12:26274000-26280000	Active TSS	Brain Angular Gyrus	brain
23	chr12:26274200-26274800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
24	chr12:26274200-26275000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
25	chr12:26274200-26275000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr12:26274200-26275000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr12:26274200-26275200	Flanking Active TSS	NH-A	brain
28	chr12:26274200-26279600	Active TSS	Colon Smooth Muscle	Colon
29	chr12:26274400-26274800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
30	chr12:26274400-26274800	Bivalent Enhancer	Fetal Thymus	thymus
31	chr12:26274400-26274800	Flanking Active TSS	Rectal Smooth Muscle	rectum
32	chr12:26274400-26275000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
33	chr12:26274400-26275000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
34	chr12:26274400-26275000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr12:26274400-26275000	Flanking Active TSS	Primary B cells from peripheral blood	blood
36	chr12:26274400-26275000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
37	chr12:26274400-26275800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr12:26274400-26276000	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr12:26274400-26279800	Active TSS	NHDF-Ad	bronchial
40	chr12:26274400-26280200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
41	chr12:26274600-26274800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
42	chr12:26274600-26274800	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
43	chr12:26274600-26274800	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr12:26274600-26274800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr12:26274600-26274800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
46	chr12:26274600-26274800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
47	chr12:26274600-26274800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
48	chr12:26274600-26274800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
49	chr12:26274600-26274800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
50	chr12:26274600-26274800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links