Variant report

Variant	rs548269878
Chromosome Location	chr1:73089014-73089015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:73088631..73089551-chr1:73310778..73311326,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422432	chr1:72821856-73148651	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv871074	chr1:72987229-73100055	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv546564	chr1:73010123-73101763	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv546565	chr1:73015588-73090608	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv428101	chr1:73017520-73211351	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv871371	chr1:73048685-73152104	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv871636	chr1:73048685-73274919	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv2763560	chr1:73077448-73122262	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv871181	chr1:73084221-73305593	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73089000-73089200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:73089000-73089200	Active TSS	Primary monocytes fromperipheralblood	blood
3	chr1:73089000-73089200	Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr1:73089000-73089200	Active TSS	Primary hematopoietic stem cells	blood
5	chr1:73089000-73089200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:73089000-73089200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:73089000-73089200	Active TSS	Muscle Satellite Cultured Cells	--
8	chr1:73089000-73089200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:73089000-73089200	Active TSS	Adipose Nuclei	Adipose
10	chr1:73089000-73089200	Active TSS	Liver	Liver
11	chr1:73089000-73089200	Active TSS	Colon Smooth Muscle	Colon
12	chr1:73089000-73089200	Active TSS	Rectal Mucosa Donor 31	rectum
13	chr1:73089000-73089200	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr1:73089000-73089200	Active TSS	HSMM	muscle
15	chr1:73089000-73089200	Active TSS	Monocytes-CD14+_RO01746	blood
16	chr1:73089000-73089200	Active TSS	NHDF-Ad	bronchial
17	chr1:73089000-73089200	Active TSS	NHEK	skin
18	chr1:73089000-73089200	Active TSS	Osteobl	bone
19	chr1:73089000-73089400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:73089000-73089400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:73089000-73089400	Active TSS	Primary T cells from cord blood	blood
22	chr1:73089000-73089400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:73089000-73089400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:73089000-73089400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:73089000-73089400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:73089000-73089400	Active TSS	Brain Angular Gyrus	brain
27	chr1:73089000-73089400	Active TSS	Brain Anterior Caudate	brain
28	chr1:73089000-73089400	Active TSS	Brain Cingulate Gyrus	brain
29	chr1:73089000-73089400	Active TSS	Brain Hippocampus Middle	brain
30	chr1:73089000-73089400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr1:73089000-73089400	Active TSS	Brain Substantia Nigra	brain
32	chr1:73089000-73089400	Active TSS	Duodenum Mucosa	Duodenum
33	chr1:73089000-73089400	Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr1:73089000-73089400	Active TSS	Fetal Kidney	kidney
35	chr1:73089000-73089400	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr1:73089000-73089400	Active TSS	Fetal Lung	lung
37	chr1:73089000-73089400	Active TSS	Rectal Mucosa Donor 29	rectum
38	chr1:73089000-73089400	Active TSS	Rectal Smooth Muscle	rectum
39	chr1:73089000-73089400	Active TSS	Right Atrium	heart
40	chr1:73089000-73089400	Active TSS	Stomach Mucosa	stomach
41	chr1:73089000-73089400	Active TSS	Thymus	Thymus
42	chr1:73089000-73089400	Enhancers	Dnd41	blood
43	chr1:73089000-73089400	Active TSS	GM12878-XiMat	blood
44	chr1:73089000-73089400	Active TSS	HSMMtube	muscle
45	chr1:73089000-73089400	Active TSS	NHLF	lung
46	chr1:73089000-73089600	Active TSS	Aorta	Aorta

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