Variant report

Variant	rs548282259
Chromosome Location	chr6:82469579-82469580
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr6:82469513-82469943	GM12878	blood:	n/a	n/a
2	MYC	chr6:82469538-82469915	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr6:82469484-82469984	MCF10A-Er-Src	breast:	n/a	chr6:82469947-82469956
4	STAT3	chr6:82469576-82469920	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr6:82469486-82469949	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr6:82469490-82469938	MCF10A-Er-Src	breast:	n/a	n/a
7	FOXA2	chr6:82469536-82469854	HepG2	liver:	n/a	n/a
8	FOS	chr6:82469554-82469934	MCF10A-Er-Src	breast:	n/a	n/a
9	KAP1	chr6:82469545-82469963	U2OS	brain:	n/a	n/a
10	STAT3	chr6:82469509-82469932	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr6:82469554-82469937	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82457043..82462432-chr6:82464909..82471112,8	MCF-7	breast:
2	chr6:82469013..82471227-chr6:82473397..82475724,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000219702	TF binding region
ENSG00000206886	TF binding region
ENSG00000112773	Chromatin interaction
ENSG00000206886	Chromatin interaction
ENSG00000219702	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966647	chr6:82469158-82472452	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82463800-82476000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:82463800-82477000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:82464000-82469600	Weak transcription	A549	lung
4	chr6:82464000-82477000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:82464200-82469600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:82464200-82469600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:82464200-82469600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:82464200-82469600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:82464200-82469600	Weak transcription	Osteobl	bone
10	chr6:82464200-82469800	Weak transcription	NHLF	lung
11	chr6:82464200-82470600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:82464200-82472800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:82464400-82475800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:82464600-82471800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:82465200-82472000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:82465600-82470600	Weak transcription	Fetal Stomach	stomach
17	chr6:82465600-82470600	Weak transcription	NHDF-Ad	bronchial
18	chr6:82467200-82474000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:82467400-82477000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:82467800-82476200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:82468000-82476000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:82468400-82471800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:82468800-82472000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:82468800-82472000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr6:82468800-82472200	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:82469000-82469800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr6:82469000-82471000	Enhancers	HepG2	liver
28	chr6:82469000-82472200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:82469000-82472200	Enhancers	NHEK	skin
30	chr6:82469200-82469800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:82469200-82469800	Enhancers	Fetal Intestine Small	intestine
32	chr6:82469200-82469800	Enhancers	Stomach Mucosa	stomach
33	chr6:82469200-82469800	Enhancers	HSMM	muscle
34	chr6:82469200-82470000	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr6:82469200-82472400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:82469200-82472600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:82469200-82472600	Enhancers	HMEC	breast
38	chr6:82469200-82473200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:82469400-82470600	Weak transcription	Small Intestine	intestine
40	chr6:82469400-82470800	Enhancers	Fetal Intestine Large	intestine

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