Variant report

Variant	rs548300699
Chromosome Location	chr4:110996582-110996583
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv1798003	chr4:110981611-110996948	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv437412	chr4:110995217-111006785	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv437414	chr4:110995217-111006785	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110964600-111004000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:110973000-111009200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:110980200-111004000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:110981000-110997000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:110981000-111004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:110981400-111006200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:110981400-111009200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:110982000-111003800	Weak transcription	NHEK	skin
9	chr4:110984000-110998000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:110984000-111006200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:110985600-111006000	Weak transcription	Fetal Intestine Small	intestine
12	chr4:110986200-111009400	Weak transcription	NHLF	lung
13	chr4:110986800-111006000	Weak transcription	HepG2	liver
14	chr4:110990400-111006400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:110991800-111008400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:110992400-111010000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:110993000-110997400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:110993000-110998400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr4:110993000-111004000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr4:110993200-111015400	Weak transcription	Psoas Muscle	Psoas
21	chr4:110994000-110997200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr4:110994000-111004000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:110994800-111006000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr4:110995000-110997200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:110995000-110999400	Weak transcription	Ovary	ovary
26	chr4:110995000-111018600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:110995200-111008600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr4:110996200-110997600	Genic enhancers	K562	blood
29	chr4:110996400-110996600	Enhancers	GM12878-XiMat	blood
30	chr4:110996400-110997600	Weak transcription	Dnd41	blood
31	chr4:110996400-110999000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:110996400-111004000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr4:110996400-111006200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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