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Variant report
Variant
rs548340966
Chromosome Location
chr1:166728900-166728901
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:3)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
MAFK
chr1:166728705-166728905
HepG2
liver:
n/a
chr1:166728789-166728804
2
MAFK
chr1:166728665-166728965
IMR90
lung:
n/a
chr1:166728789-166728804
3
MAFK
chr1:166728630-166728951
HepG2
liver:
n/a
chr1:166728789-166728804
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr1:166728629..166730764-chr1:166733710..166736477,2
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
FMO11P
TF binding region
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv916491
chr1:166000783-166948513
Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site
38 gene(s)
inside rSNPs
diseases
2
nsv946425
chr1:166720534-166732142
Inactive region
TF binding regionChromatin interactive regionlncRNA
1 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links