Variant report

Variant	rs548354644
Chromosome Location	chr11:3992870-3992871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:3991210..3994913-chr11:3996027..3998429,3	K562	blood:
2	chr11:3991210..3992944-chr11:3996027..3998570,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv971973	chr11:3992858-3995856	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3961200-4002000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:3973200-3993200	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:3973200-4008400	Weak transcription	Fetal Lung	lung
4	chr11:3973600-3993800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:3975000-4006000	Weak transcription	Right Ventricle	heart
6	chr11:3980600-3994200	Weak transcription	Fetal Stomach	stomach
7	chr11:3981600-3993000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:3982000-3993200	Weak transcription	NHEK	skin
9	chr11:3982400-3994200	Weak transcription	Brain Anterior Caudate	brain
10	chr11:3982600-3994000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:3982600-3994200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:3982600-4004400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:3982600-4005600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:3982600-4006000	Weak transcription	Left Ventricle	heart
15	chr11:3984000-4010400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:3984400-3993000	Weak transcription	A549	lung
17	chr11:3985000-3993000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:3985000-3993200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:3985000-4002400	Weak transcription	NHDF-Ad	bronchial
20	chr11:3985800-3993800	Weak transcription	HMEC	breast
21	chr11:3985800-4001200	Weak transcription	Small Intestine	intestine
22	chr11:3986000-4008000	Weak transcription	HepG2	liver
23	chr11:3987000-4010400	Weak transcription	Fetal Intestine Small	intestine
24	chr11:3987200-4001600	Weak transcription	Gastric	stomach
25	chr11:3987800-3993400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr11:3988000-4002400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:3988200-4006200	Weak transcription	Pancreas	Pancrea
28	chr11:3989400-3993400	Weak transcription	Lung	lung
29	chr11:3989400-3997600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:3989400-4010600	Weak transcription	Spleen	Spleen
31	chr11:3989400-4031000	Weak transcription	Aorta	Aorta
32	chr11:3989800-4002400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr11:3989800-4006000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr11:3989800-4006200	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:3989800-4006600	Weak transcription	Liver	Liver
36	chr11:3990000-3993600	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr11:3990000-4002000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr11:3990400-3996600	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr11:3990400-4006000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr11:3990600-3996600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr11:3990600-4000600	Weak transcription	Primary B cells from cord blood	blood
42	chr11:3990800-3994200	Weak transcription	Esophagus	oesophagus
43	chr11:3991200-4000800	Weak transcription	Ovary	ovary
44	chr11:3991200-4002400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:3991200-4004400	Weak transcription	Primary B cells from peripheral blood	blood
46	chr11:3991200-4006200	Weak transcription	Adipose Nuclei	Adipose
47	chr11:3991400-4003000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:3991600-3993000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr11:3991600-3994000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr11:3991600-3996000	Weak transcription	Brain Cingulate Gyrus	brain

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