Variant report

Variant	rs548356647
Chromosome Location	chr7:39054221-39054222
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830967	chr7:38913837-39069253	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv887967	chr7:39009307-39090698	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3409286	chr7:39054027-39056825	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3340292	chr7:39054052-39056600	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39052600-39054400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr7:39052600-39054400	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr7:39053200-39054600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:39053200-39056200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:39053400-39056200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:39053600-39056400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:39053600-39056400	Weak transcription	Placenta	Placenta
8	chr7:39054000-39054600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr7:39054200-39054600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:39054200-39054600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:39054200-39054600	Flanking Active TSS	K562	blood
12	chr7:39054200-39056200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:39054200-39057000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:39054200-39062000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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