Variant report

Variant	rs548372618
Chromosome Location	chr1:155205180-155205181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
3	nsv831614	chr1:155094978-155275031	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	434 gene(s)	inside rSNPs	diseases
4	esv2757756	chr1:155094978-155314807	Bivalent Enhancer Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
5	esv2758971	chr1:155094978-155314807	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
6	nsv470741	chr1:155115260-155230131	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	381 gene(s)	inside rSNPs	diseases
7	nsv872457	chr1:155135335-155310443	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
8	nsv831625	chr1:155145634-155313409	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
9	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
10	nsv547963	chr1:155178746-155206167	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
11	nsv870053	chr1:155180349-155212316	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
12	esv13606	chr1:155180489-155221243	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
13	esv3394856	chr1:155184707-155205412	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
14	esv2421617	chr1:155185951-155206167	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
15	nsv870387	chr1:155187481-155205523	Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
16	nsv1008748	chr1:155189148-155230610	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
17	nsv1011773	chr1:155189148-155234821	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
18	esv1793876	chr1:155194112-155212255	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	75 gene(s)	inside rSNPs	diseases
19	nsv946412	chr1:155204296-155207961	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155197000-155205800	Weak transcription	Gastric	stomach
2	chr1:155197200-155212800	Weak transcription	Small Intestine	intestine
3	chr1:155198000-155205400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr1:155198000-155205400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:155198000-155205600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:155198000-155205600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:155198000-155205800	Weak transcription	Primary B cells from cord blood	blood
8	chr1:155198000-155205800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:155198000-155206800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:155198000-155209600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr1:155198000-155210400	Weak transcription	A549	lung
12	chr1:155198000-155210400	Weak transcription	HMEC	breast
13	chr1:155198000-155210400	Weak transcription	HSMM	muscle
14	chr1:155198000-155210600	Weak transcription	Psoas Muscle	Psoas
15	chr1:155198000-155210800	Weak transcription	Fetal Kidney	kidney
16	chr1:155198200-155205200	Weak transcription	Brain Angular Gyrus	brain
17	chr1:155198200-155205200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr1:155198200-155205200	Weak transcription	Fetal Brain Female	brain
19	chr1:155198200-155205200	Weak transcription	Lung	lung
20	chr1:155198200-155205400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:155198200-155205400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr1:155198200-155205400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr1:155198200-155205400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:155198200-155205400	Weak transcription	Colonic Mucosa	Colon
25	chr1:155198200-155205400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr1:155198200-155205400	Weak transcription	Left Ventricle	heart
27	chr1:155198200-155205600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr1:155198200-155205600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr1:155198200-155205600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:155198200-155205600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr1:155198200-155205600	Weak transcription	Fetal Intestine Large	intestine
32	chr1:155198200-155205600	Weak transcription	NHDF-Ad	bronchial
33	chr1:155198200-155205800	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr1:155198200-155205800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr1:155198200-155205800	Weak transcription	Primary T cells from cord blood	blood
36	chr1:155198200-155205800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr1:155198200-155205800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr1:155198200-155205800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr1:155198200-155205800	Weak transcription	Right Ventricle	heart
40	chr1:155198200-155206000	Weak transcription	Brain Substantia Nigra	brain
41	chr1:155198200-155206000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr1:155198200-155206000	Weak transcription	Hela-S3	cervix
43	chr1:155198200-155206200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr1:155198200-155207800	Weak transcription	NHLF	lung
45	chr1:155198200-155209600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr1:155198200-155209600	Weak transcription	Fetal Brain Male	brain
47	chr1:155198200-155210400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr1:155198200-155210400	Weak transcription	Stomach Mucosa	stomach
49	chr1:155198200-155210400	Weak transcription	NHEK	skin
50	chr1:155198200-155210800	Weak transcription	H9 Cell Line	embryonic stem cell

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