Variant report

Variant	rs548426644
Chromosome Location	chr7:47764911-47764912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:47758562..47761407-chr7:47764047..47766786,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1018608	chr7:47708525-47831535	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1022906	chr7:47709936-47831535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1015163	chr7:47734913-47832389	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv538831	chr7:47734913-47832389	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv522585	chr7:47764737-47777685	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47759600-47767000	Enhancers	Primary B cells from peripheral blood	blood
2	chr7:47761000-47765000	Weak transcription	GM12878-XiMat	blood
3	chr7:47762600-47765200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr7:47763000-47766200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:47763400-47766000	Enhancers	Primary B cells from cord blood	blood
6	chr7:47763600-47765000	Enhancers	Fetal Muscle Trunk	muscle
7	chr7:47763600-47765400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:47763600-47765400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:47763800-47765000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:47763800-47765000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:47763800-47765000	Enhancers	Fetal Muscle Leg	muscle
12	chr7:47763800-47765000	Enhancers	Placenta	Placenta
13	chr7:47763800-47765000	Enhancers	HSMMtube	muscle
14	chr7:47763800-47765200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:47763800-47765200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:47763800-47765200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:47763800-47765200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:47763800-47765200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr7:47763800-47765200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr7:47763800-47765200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:47763800-47765200	Enhancers	NHLF	lung
22	chr7:47763800-47765400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr7:47763800-47765400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr7:47763800-47765400	Enhancers	Hela-S3	cervix
25	chr7:47763800-47765600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:47763800-47765800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:47763800-47765800	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr7:47763800-47766000	Enhancers	Spleen	Spleen
29	chr7:47763800-47766600	Enhancers	HepG2	liver
30	chr7:47763800-47767000	Enhancers	Fetal Kidney	kidney
31	chr7:47764000-47765000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:47764000-47765000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr7:47764000-47765000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr7:47764000-47765000	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr7:47764000-47765200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:47764000-47765200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr7:47764000-47765200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:47764000-47765200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:47764000-47765200	Enhancers	HMEC	breast
40	chr7:47764000-47765200	Enhancers	HSMM	muscle
41	chr7:47764000-47765400	Enhancers	HUVEC	blood vessel
42	chr7:47764000-47765600	Enhancers	Stomach Mucosa	stomach
43	chr7:47764000-47766000	Enhancers	Fetal Stomach	stomach
44	chr7:47764000-47766800	Enhancers	Fetal Intestine Large	intestine
45	chr7:47764000-47766800	Enhancers	A549	lung
46	chr7:47764200-47765000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr7:47764200-47765000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:47764200-47765200	Enhancers	Osteobl	bone
49	chr7:47764200-47766800	Enhancers	Fetal Intestine Small	intestine
50	chr7:47764400-47765200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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