Variant report

Variant	rs548433887
Chromosome Location	chr6:150518223-150518224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150512430..150514564-chr6:150515573..150518401,3	K562	blood:
2	chr6:150510588..150515411-chr6:150515857..150521257,7	MCF-7	breast:
3	chr6:150512430..150515646-chr6:150516901..150519316,3	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:150514800-150524000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:150515400-150519600	Weak transcription	Fetal Brain Male	brain
4	chr6:150516400-150518400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:150516400-150519000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr6:150516800-150518800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:150516800-150518800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:150516800-150518800	Enhancers	Fetal Intestine Large	intestine
9	chr6:150516800-150518800	Enhancers	Fetal Intestine Small	intestine
10	chr6:150516800-150518800	Enhancers	Fetal Muscle Leg	muscle
11	chr6:150517000-150518400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:150517000-150518600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:150517000-150518600	Enhancers	HMEC	breast
14	chr6:150517000-150518600	Enhancers	NHEK	skin
15	chr6:150517000-150519000	Enhancers	Colonic Mucosa	Colon
16	chr6:150517200-150518400	Enhancers	Esophagus	oesophagus
17	chr6:150517200-150518400	Enhancers	Rectal Smooth Muscle	rectum
18	chr6:150517400-150518400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:150517400-150518400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:150517400-150519000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr6:150517400-150519800	Weak transcription	K562	blood
22	chr6:150517600-150529200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:150517800-150518600	Enhancers	Fetal Brain Female	brain
24	chr6:150518000-150518400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr6:150518000-150518600	Enhancers	Placenta	Placenta
26	chr6:150518000-150518600	Enhancers	Psoas Muscle	Psoas
27	chr6:150518000-150518600	Enhancers	Right Ventricle	heart
28	chr6:150518000-150522200	Enhancers	Left Ventricle	heart
29	chr6:150518200-150518400	Enhancers	Spleen	Spleen
30	chr6:150518200-150518600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:150518200-150518600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:150518200-150518600	Enhancers	Fetal Muscle Trunk	muscle
33	chr6:150518200-150518600	Enhancers	Lung	lung
34	chr6:150518200-150518600	Enhancers	Pancreas	Pancrea
35	chr6:150518200-150518600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
36	chr6:150518200-150518600	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr6:150518200-150520000	Enhancers	Right Atrium	heart
38	chr6:150518200-150520800	Active TSS	Duodenum Mucosa	Duodenum
39	chr6:150518200-150523000	Weak transcription	Stomach Mucosa	stomach
40	chr6:150518200-150530800	Enhancers	Fetal Heart	heart

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