Variant report

Variant	rs548439076
Chromosome Location	chr6:24358557-24358558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr6:24357734-24358568	MCF-7	breast:	n/a	n/a
2	CREB1	chr6:24357452-24358653	HepG2	liver:	n/a	n/a
3	ELF1	chr6:24357540-24358628	MCF-7	breast:	n/a	n/a
4	MAX	chr6:24357443-24358672	HepG2	liver:	n/a	n/a
5	ELF1	chr6:24357479-24358617	MCF-7	breast:	n/a	n/a
6	ZEB1	chr6:24357372-24358914	HepG2	liver:	n/a	n/a
7	CEBPB	chr6:24358209-24358576	HepG2	liver:	n/a	chr6:24358379-24358390
8	MAX	chr6:24357654-24358605	MCF-7	breast:	n/a	n/a
9	POLR2A	chr6:24357503-24358653	SK-N-MC	brain:	n/a	n/a
10	RCOR1	chr6:24357806-24358569	HepG2	liver:	n/a	n/a
11	GABPA	chr6:24358002-24358601	MCF-7	breast:	n/a	n/a
12	CEBPB	chr6:24357963-24358684	MCF-7	breast:	n/a	chr6:24358379-24358390
13	ZEB1	chr6:24357543-24358786	HepG2	liver:	n/a	n/a
14	KAP1	chr6:24357528-24358643	HEK293	kidney:	n/a	n/a
15	MYBL2	chr6:24357429-24358652	HepG2	liver:	n/a	n/a
16	MBD4	chr6:24357663-24358711	HepG2	liver:	n/a	n/a
17	SMC3	chr6:24358071-24358561	HepG2	liver:	n/a	n/a
18	MAX	chr6:24357492-24358650	A549	lung:	n/a	n/a
19	POLR2A	chr6:24357513-24358566	MCF-7	breast:	n/a	n/a
20	POLR2A	chr6:24358549-24358557	HepG2	liver:	n/a	n/a
21	HEY1	chr6:24357866-24358567	HepG2	liver:	n/a	n/a
22	TEAD4	chr6:24357953-24358714	HepG2	liver:	n/a	n/a
23	CEBPB	chr6:24358051-24358632	A549	lung:	n/a	chr6:24358379-24358390
24	CEBPB	chr6:24358260-24358666	HepG2	liver:	n/a	chr6:24358379-24358390
25	MYBL2	chr6:24357877-24358710	HepG2	liver:	n/a	n/a
26	TCF12	chr6:24357951-24358566	A549	lung:	n/a	n/a
27	SIN3AK20	chr6:24357420-24358748	MCF-7	breast:	n/a	n/a
28	MAX	chr6:24356810-24358746	HepG2	liver:	n/a	n/a
29	MAX	chr6:24357888-24358602	MCF-7	breast:	n/a	n/a
30	MAZ	chr6:24358001-24358587	HepG2	liver:	n/a	n/a
31	GATA3	chr6:24357720-24358638	MCF-7	breast:	n/a	n/a
32	CEBPB	chr6:24358031-24358579	A549	lung:	n/a	chr6:24358379-24358390
33	ARID3A	chr6:24358029-24358618	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
DCDC2	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3426241	chr6:24358398-24360946	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3336385	chr6:24358423-24360671	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24353200-24358800	Active TSS	Fetal Kidney	kidney
2	chr6:24354200-24358800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr6:24354800-24358800	Active TSS	A549	lung
4	chr6:24357000-24358600	Active TSS	Fetal Intestine Small	intestine
5	chr6:24357400-24358800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:24357400-24358800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:24357400-24359800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:24357600-24358600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
9	chr6:24357600-24358600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:24357600-24358600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:24357600-24358600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:24357600-24358800	Active TSS	Rectal Smooth Muscle	rectum
13	chr6:24357600-24358800	Enhancers	Spleen	Spleen
14	chr6:24357800-24358600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:24357800-24358600	Flanking Active TSS	Primary B cells from peripheral blood	blood
16	chr6:24357800-24358600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:24357800-24358600	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:24357800-24358600	Flanking Active TSS	Liver	Liver
19	chr6:24357800-24358600	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr6:24357800-24358600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:24357800-24358600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr6:24357800-24358600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr6:24357800-24358600	Active TSS	GM12878-XiMat	blood
24	chr6:24357800-24358800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
25	chr6:24357800-24358800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:24357800-24358800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:24358000-24358600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:24358000-24358600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
29	chr6:24358000-24358600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
30	chr6:24358000-24358600	Active TSS	Colon Smooth Muscle	Colon
31	chr6:24358000-24358600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
32	chr6:24358000-24358600	Active TSS	Psoas Muscle	Psoas
33	chr6:24358000-24358600	Bivalent Enhancer	HUVEC	blood vessel
34	chr6:24358000-24358800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
35	chr6:24358000-24358800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:24358000-24358800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
37	chr6:24358000-24358800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
38	chr6:24358000-24358800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:24358000-24358800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
40	chr6:24358000-24358800	Flanking Bivalent TSS/Enh	NHEK	skin
41	chr6:24358200-24358600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
42	chr6:24358200-24358600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr6:24358200-24358600	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
44	chr6:24358200-24358600	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
45	chr6:24358200-24358600	Flanking Active TSS	Stomach Mucosa	stomach
46	chr6:24358200-24358600	Flanking Active TSS	HMEC	breast
47	chr6:24358200-24358600	Bivalent Enhancer	K562	blood
48	chr6:24358200-24358600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
49	chr6:24358200-24358800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:24358200-24358800	Active TSS	Brain Cingulate Gyrus	brain

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