Variant report

Variant	rs548456229
Chromosome Location	chr3:78778015-78778016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:78772880..78774546-chr3:78776083..78778103,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1842222	chr3:78744206-78778901	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3404191	chr3:78777462-78781660	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78766600-78783000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:78772000-78792200	Weak transcription	HepG2	liver
3	chr3:78774400-78783200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:78777200-78778400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:78777200-78778800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:78777200-78779400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:78777200-78779400	Enhancers	Brain Germinal Matrix	brain
8	chr3:78777400-78778400	Enhancers	Fetal Heart	heart
9	chr3:78777400-78778600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:78777400-78778800	Enhancers	NHDF-Ad	bronchial
11	chr3:78777400-78779000	Enhancers	Fetal Lung	lung
12	chr3:78777400-78779400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr3:78777400-78780000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:78777400-78780400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:78777600-78778400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:78777600-78778400	Flanking Active TSS	Brain Hippocampus Middle	brain
17	chr3:78777600-78778600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr3:78777600-78778600	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr3:78777600-78780000	Enhancers	Fetal Brain Male	brain
20	chr3:78777800-78778200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr3:78777800-78778200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr3:78777800-78778200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:78777800-78778200	Active TSS	Brain Anterior Caudate	brain
24	chr3:78777800-78778200	Flanking Active TSS	Brain Cingulate Gyrus	brain
25	chr3:78777800-78778200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
26	chr3:78777800-78778400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:78777800-78778400	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr3:78777800-78778400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr3:78777800-78778400	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr3:78777800-78778800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:78777800-78779000	Enhancers	Osteobl	bone
32	chr3:78777800-78779200	Enhancers	Fetal Stomach	stomach
33	chr3:78777800-78779400	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr3:78777800-78779400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:78777800-78779400	Enhancers	Fetal Brain Female	brain
36	chr3:78777800-78780600	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr3:78778000-78778200	Active TSS	Brain Substantia Nigra	brain
38	chr3:78778000-78778400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr3:78778000-78778400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:78778000-78778400	Active TSS	Brain Angular Gyrus	brain
41	chr3:78778000-78778400	Enhancers	Fetal Muscle Trunk	muscle
42	chr3:78778000-78778400	Enhancers	Stomach Mucosa	stomach
43	chr3:78778000-78778400	Enhancers	HMEC	breast
44	chr3:78778000-78778400	Enhancers	NHEK	skin
45	chr3:78778000-78778600	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr3:78778000-78778600	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr3:78778000-78778600	Enhancers	Fetal Kidney	kidney
48	chr3:78778000-78778800	Enhancers	Fetal Muscle Leg	muscle
49	chr3:78778000-78778800	Enhancers	Ovary	ovary
50	chr3:78778000-78778800	Enhancers	Rectal Smooth Muscle	rectum

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