Variant report

Variant	rs548465526
Chromosome Location	chr11:74858431-74858432
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr11:74858156-74859222	SK-N-SH	brain:	n/a	chr11:74858397-74858410
2	GATA2	chr11:74858060-74858983	SH-SY5Y	brain:	n/a	n/a
3	GATA1	chr11:74858351-74859055	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:74856309..74859040-chr11:74914787..74916343,2	MCF-7	breast:
2	chr11:74851665..74854336-chr11:74855499..74858438,2	MCF-7	breast:
3	chr11:74856790..74858510-chr11:74872953..74874736,2	K562	blood:

Variant related genes	Relation type
SLCO2B1	TF binding region

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526053	chr11:74857436-74861545	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74852000-74861600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:74852400-74861000	Weak transcription	Stomach Mucosa	stomach
3	chr11:74853800-74860200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:74853800-74862000	Enhancers	HepG2	liver
5	chr11:74853800-74862200	Enhancers	Placenta	Placenta
6	chr11:74854000-74862000	Enhancers	Fetal Intestine Large	intestine
7	chr11:74855200-74862200	Enhancers	Fetal Intestine Small	intestine
8	chr11:74855600-74861200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:74855600-74861600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:74855800-74858800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:74855800-74858800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:74856000-74858800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:74856200-74860200	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr11:74856400-74859200	Enhancers	K562	blood
15	chr11:74856400-74859600	Enhancers	Colonic Mucosa	Colon
16	chr11:74856600-74858600	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:74856600-74863400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:74857000-74859400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:74857000-74860000	Enhancers	Adipose Nuclei	Adipose
20	chr11:74857400-74858600	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr11:74857400-74859000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:74857400-74865600	Weak transcription	Small Intestine	intestine
23	chr11:74857600-74859200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:74857800-74859000	Enhancers	Brain Anterior Caudate	brain
25	chr11:74857800-74859000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr11:74857800-74859800	Enhancers	Lung	lung
27	chr11:74857800-74860000	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr11:74857800-74860000	Enhancers	Fetal Muscle Leg	muscle
29	chr11:74858000-74860000	Enhancers	Fetal Thymus	thymus
30	chr11:74858200-74858800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr11:74858200-74859000	Enhancers	Liver	Liver
32	chr11:74858200-74859000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
33	chr11:74858200-74859200	Bivalent Enhancer	Fetal Stomach	stomach
34	chr11:74858200-74859400	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr11:74858200-74859400	Enhancers	Esophagus	oesophagus
36	chr11:74858200-74860000	Enhancers	Spleen	Spleen
37	chr11:74858200-74861400	Enhancers	Duodenum Mucosa	Duodenum
38	chr11:74858400-74859000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:74858400-74859000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:74858400-74859000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:74858400-74859000	Enhancers	Left Ventricle	heart
42	chr11:74858400-74859200	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr11:74858400-74859200	Enhancers	Fetal Muscle Trunk	muscle
44	chr11:74858400-74859200	Enhancers	Right Atrium	heart
45	chr11:74858400-74859400	Enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links