Variant report

Variant	rs548479192
Chromosome Location	chr9:101469201-101469202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101298822..101299808-chr9:101469168..101470098,4	K562	blood:
2	chr9:101455554..101459399-chr9:101467510..101471263,4	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv893616	chr9:101371017-101472921	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv825007	chr9:101467848-101476292	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3338088	chr9:101469131-101473529	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101468800-101469400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:101468800-101469600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:101468800-101469800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
4	chr9:101468800-101469800	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr9:101469000-101469400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:101469000-101469400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:101469000-101469400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr9:101469000-101469400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
9	chr9:101469000-101469400	Bivalent Enhancer	Fetal Intestine Small	intestine
10	chr9:101469000-101469400	Enhancers	Pancreas	Pancrea
11	chr9:101469000-101469400	Bivalent Enhancer	NH-A	brain
12	chr9:101469000-101469600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
13	chr9:101469000-101469600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
14	chr9:101469000-101469800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
15	chr9:101469000-101469800	Bivalent Enhancer	Fetal Stomach	stomach
16	chr9:101469000-101469800	Bivalent Enhancer	Ovary	ovary
17	chr9:101469000-101469800	Bivalent Enhancer	NHDF-Ad	bronchial
18	chr9:101469000-101470000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
19	chr9:101469000-101470000	Bivalent Enhancer	Spleen	Spleen
20	chr9:101469000-101470600	Flanking Active TSS	HUVEC	blood vessel
21	chr9:101469000-101470800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
22	chr9:101469000-101471000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:101469000-101471000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:101469000-101471800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
25	chr9:101469200-101469400	Flanking Bivalent TSS/Enh	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:101469200-101469400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:101469200-101469400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:101469200-101469400	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:101469200-101469400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
30	chr9:101469200-101469400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:101469200-101469400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:101469200-101469400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
33	chr9:101469200-101469400	Bivalent Enhancer	Fetal Brain Male	brain
34	chr9:101469200-101469400	Bivalent Enhancer	Fetal Intestine Large	intestine
35	chr9:101469200-101469400	Bivalent Enhancer	Fetal Kidney	kidney
36	chr9:101469200-101469400	Enhancers	Right Atrium	heart
37	chr9:101469200-101469400	Bivalent Enhancer	Small Intestine	intestine
38	chr9:101469200-101469400	Bivalent/Poised TSS	Osteobl	bone
39	chr9:101469200-101469600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
40	chr9:101469200-101469600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
41	chr9:101469200-101469600	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:101469200-101469600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr9:101469200-101469600	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:101469200-101469600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
45	chr9:101469200-101469600	Bivalent Enhancer	Right Ventricle	heart
46	chr9:101469200-101469600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
47	chr9:101469200-101469600	Enhancers	K562	blood
48	chr9:101469200-101469800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr9:101469200-101469800	Bivalent Enhancer	HSMMtube	muscle
50	chr9:101469200-101470200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

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