Variant report

Variant	rs548522725
Chromosome Location	chr11:76534860-76534861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76531797..76536472-chr11:76570745..76574159,6	MCF-7	breast:
2	chr11:76493947..76496301-chr11:76534591..76536584,2	MCF-7	breast:
3	chr11:76497234..76499501-chr11:76534793..76537709,2	K562	blood:
4	chr11:76497529..76499535-chr11:76534642..76536244,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRRC32-7	chr11:76534468-76534868	NONHSAT023194

Variant related genes	Relation type
ENSG00000255100	Chromatin interaction
ENSG00000182704	Chromatin interaction
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3332513	chr11:76533354-76535352	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76533600-76537400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:76533600-76537400	Enhancers	HMEC	breast
3	chr11:76533800-76536000	Weak transcription	GM12878-XiMat	blood
4	chr11:76533800-76537000	Enhancers	NHDF-Ad	bronchial
5	chr11:76534200-76537400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:76534400-76535200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:76534400-76535200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:76534400-76535200	Enhancers	HSMM	muscle
9	chr11:76534400-76535400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:76534400-76535600	Enhancers	Right Atrium	heart
11	chr11:76534400-76535600	Flanking Active TSS	A549	lung
12	chr11:76534400-76535800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr11:76534400-76535800	Flanking Active TSS	Hela-S3	cervix
14	chr11:76534400-76536800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:76534400-76537200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr11:76534400-76537200	Enhancers	Placenta	Placenta
17	chr11:76534400-76537400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:76534600-76535000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:76534600-76535000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:76534600-76535000	Active TSS	HUVEC	blood vessel
21	chr11:76534600-76535200	Enhancers	H9 Cell Line	embryonic stem cell
22	chr11:76534600-76535200	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr11:76534600-76535200	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr11:76534600-76535200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:76534600-76535200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:76534600-76535200	Enhancers	Placenta Amnion	Placenta Amnion
27	chr11:76534600-76535400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr11:76534600-76535400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr11:76534600-76535400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr11:76534600-76535400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:76534600-76535400	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr11:76534600-76535400	Enhancers	Stomach Mucosa	stomach
33	chr11:76534600-76535600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:76534600-76535600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:76534600-76535600	Enhancers	Primary B cells from cord blood	blood
36	chr11:76534600-76535600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:76534600-76535800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:76534600-76535800	Flanking Active TSS	K562	blood
39	chr11:76534600-76535800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr11:76534600-76535800	Enhancers	NHLF	lung
41	chr11:76534600-76536000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:76534600-76536400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:76534600-76536600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:76534600-76536800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:76534600-76536800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:76534600-76536800	Enhancers	Esophagus	oesophagus
47	chr11:76534600-76536800	Enhancers	Fetal Muscle Leg	muscle
48	chr11:76534600-76536800	Enhancers	Lung	lung
49	chr11:76534600-76536800	Flanking Active TSS	NHEK	skin
50	chr11:76534600-76537200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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