Variant report

Variant	rs548524923
Chromosome Location	chr15:76199238-76199239
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76198080..76200117-chr15:76302997..76305301,2	K562	blood:
2	chr15:76119288..76121782-chr15:76196929..76199801,2	MCF-7	breast:
3	chr15:76043391..76046153-chr15:76197743..76199339,2	K562	blood:
4	chr15:76042074..76044891-chr15:76197743..76199352,2	K562	blood:
5	chr15:76198419..76200279-chr15:76206976..76209395,2	MCF-7	breast:
6	chr15:76106000..76108161-chr15:76197169..76199815,2	K562	blood:
7	chr15:76134186..76138083-chr15:76192925..76200499,13	K562	blood:
8	chr15:76197876..76200191-chr15:76201024..76203742,3	K562	blood:
9	chr15:76133513..76135686-chr15:76197077..76199300,3	K562	blood:
10	chr15:76197909..76200277-chr15:76201455..76203414,2	MCF-7	breast:
11	chr15:76133681..76139746-chr15:76193985..76199740,23	MCF-7	breast:
12	chr15:76198411..76200374-chr15:76209786..76212677,2	K562	blood:
13	chr15:76199053..76202024-chr15:76204080..76208580,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000167196	Chromatin interaction
ENSG00000140367	Chromatin interaction
ENSG00000169752	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76197000-76200600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:76197000-76200600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr15:76197000-76200600	Weak transcription	Left Ventricle	heart
4	chr15:76197000-76205800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:76197000-76206200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr15:76197000-76210800	Weak transcription	Aorta	Aorta
7	chr15:76197000-76214600	Weak transcription	Small Intestine	intestine
8	chr15:76197200-76200000	Weak transcription	Fetal Stomach	stomach
9	chr15:76197200-76200600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:76197200-76200600	Weak transcription	Fetal Intestine Small	intestine
11	chr15:76197200-76202200	Weak transcription	Fetal Lung	lung
12	chr15:76197200-76205400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr15:76197200-76205400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr15:76197200-76205400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr15:76197200-76205400	Weak transcription	Brain Germinal Matrix	brain
16	chr15:76197200-76205400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:76197200-76205600	Weak transcription	Ovary	ovary
18	chr15:76197200-76206000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr15:76197200-76206000	Weak transcription	Brain Angular Gyrus	brain
20	chr15:76197200-76206200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:76197200-76206600	Weak transcription	Thymus	Thymus
22	chr15:76197200-76216800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr15:76197200-76216800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:76197600-76201600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr15:76197600-76202400	Strong transcription	Fetal Muscle Trunk	muscle
26	chr15:76197600-76205600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr15:76197600-76206000	Weak transcription	Brain Substantia Nigra	brain
28	chr15:76197600-76210200	Weak transcription	Brain Hippocampus Middle	brain
29	chr15:76197800-76199400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:76197800-76199400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr15:76197800-76199400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr15:76197800-76199800	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr15:76197800-76200600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:76197800-76200800	Weak transcription	Adipose Nuclei	Adipose
35	chr15:76197800-76200800	Weak transcription	Fetal Heart	heart
36	chr15:76197800-76202600	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr15:76197800-76202600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr15:76197800-76203400	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr15:76197800-76205600	Weak transcription	Brain Anterior Caudate	brain
40	chr15:76197800-76205600	Weak transcription	Spleen	Spleen
41	chr15:76197800-76205800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr15:76197800-76206600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr15:76197800-76206800	Weak transcription	Lung	lung
44	chr15:76197800-76214400	Weak transcription	Stomach Mucosa	stomach
45	chr15:76197800-76217400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr15:76198000-76200600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr15:76198000-76201000	Strong transcription	NH-A	brain
48	chr15:76198000-76201400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr15:76198000-76201600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:76198000-76202800	Strong transcription	H1 Cell Line	embryonic stem cell

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