Variant report

Variant	rs548530143
Chromosome Location	chr11:121357725-121357726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121337400-121358800	Weak transcription	Right Ventricle	heart
2	chr11:121337600-121358800	Weak transcription	Brain Germinal Matrix	brain
3	chr11:121339000-121358200	Weak transcription	Aorta	Aorta
4	chr11:121344200-121358200	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:121347800-121359400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:121349800-121358200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:121349800-121365000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:121349800-121393000	Weak transcription	Colonic Mucosa	Colon
9	chr11:121350000-121357800	Weak transcription	Esophagus	oesophagus
10	chr11:121350000-121401400	Weak transcription	Fetal Brain Male	brain
11	chr11:121350200-121367800	Weak transcription	Fetal Kidney	kidney
12	chr11:121350400-121393200	Weak transcription	Gastric	stomach
13	chr11:121350600-121359600	Weak transcription	Stomach Mucosa	stomach
14	chr11:121350800-121368400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:121351200-121366600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:121351400-121384600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr11:121352800-121377600	Strong transcription	HepG2	liver
18	chr11:121353200-121358200	Weak transcription	Brain Angular Gyrus	brain
19	chr11:121353400-121358000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:121353400-121358400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:121353600-121357800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:121353600-121358200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:121353600-121358400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:121353600-121358400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:121353600-121358600	Weak transcription	Lung	lung
26	chr11:121353600-121364400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:121353600-121367200	Weak transcription	Fetal Lung	lung
28	chr11:121353600-121377000	Weak transcription	Pancreas	Pancrea
29	chr11:121353800-121358400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:121353800-121358600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:121353800-121358600	Weak transcription	NHEK	skin
32	chr11:121353800-121359000	Genic enhancers	Primary T cells fromperipheralblood	blood
33	chr11:121353800-121365000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:121353800-121365000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:121353800-121374200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:121354200-121357800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:121354200-121359400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:121354200-121365000	Weak transcription	HMEC	breast
39	chr11:121354400-121364000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr11:121354400-121364600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr11:121354400-121365000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:121354600-121363000	Strong transcription	Liver	Liver
43	chr11:121354600-121365000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr11:121354800-121357800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr11:121354800-121360600	Strong transcription	GM12878-XiMat	blood
46	chr11:121355000-121359200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:121355000-121364200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:121355200-121357800	Weak transcription	Brain Substantia Nigra	brain
49	chr11:121355200-121362600	Strong transcription	Fetal Thymus	thymus
50	chr11:121355200-121363000	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links