Variant report

Variant	rs548531729
Chromosome Location	chr12:45691837-45691838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:45606867..45609787-chr12:45691582..45693288,2	K562	blood:
2	chr12:45690992..45693119-chr12:45698128..45699673,2	MCF-7	breast:
3	chr12:45609373..45612977-chr12:45689152..45693084,3	MCF-7	breast:
4	chr12:45687856..45690300-chr12:45690892..45693312,2	K562	blood:
5	chr12:45686301..45689290-chr12:45690781..45693334,2	K562	blood:
6	chr12:45690191..45692024-chr12:45717586..45719684,2	MCF-7	breast:
7	chr12:45684442..45687788-chr12:45687793..45692076,3	MCF-7	breast:
8	chr12:45685386..45687801-chr12:45690061..45692281,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000177119	Chromatin interaction
ENSG00000134297	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050923	chr12:45581310-45808289	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv690	chr12:45674127-45718859	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv826357	chr12:45691091-45740769	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45654400-45725600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:45662800-45696800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr12:45666200-45709200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr12:45668400-45697800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr12:45668600-45693000	Weak transcription	Pancreas	Pancrea
6	chr12:45674200-45706800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr12:45674400-45692200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:45675800-45709000	Weak transcription	Lung	lung
9	chr12:45676200-45693000	Weak transcription	Fetal Stomach	stomach
10	chr12:45676400-45696000	Weak transcription	Fetal Thymus	thymus
11	chr12:45676400-45697800	Weak transcription	Dnd41	blood
12	chr12:45676400-45740400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr12:45677000-45696000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr12:45677600-45698200	Weak transcription	Primary T cells from cord blood	blood
15	chr12:45677800-45696000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr12:45679200-45692200	Weak transcription	NHDF-Ad	bronchial
17	chr12:45679800-45692200	Weak transcription	NH-A	brain
18	chr12:45680000-45736800	Weak transcription	Fetal Intestine Small	intestine
19	chr12:45680200-45692600	Weak transcription	Fetal Intestine Large	intestine
20	chr12:45680400-45697600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr12:45680800-45693000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr12:45681000-45698200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr12:45681200-45697800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr12:45683600-45709400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr12:45684400-45692200	Weak transcription	Osteobl	bone
26	chr12:45684400-45693000	Weak transcription	Small Intestine	intestine
27	chr12:45684400-45721800	Weak transcription	Esophagus	oesophagus
28	chr12:45684600-45692400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr12:45685000-45693400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr12:45685800-45697800	Weak transcription	GM12878-XiMat	blood
31	chr12:45685800-45698200	Weak transcription	Primary B cells from peripheral blood	blood
32	chr12:45686000-45692200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr12:45686200-45707000	Weak transcription	Primary B cells from cord blood	blood
34	chr12:45686800-45692200	Weak transcription	NHLF	lung
35	chr12:45686800-45693000	Weak transcription	Left Ventricle	heart
36	chr12:45686800-45693200	Weak transcription	Ovary	ovary
37	chr12:45687000-45692200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr12:45687000-45692800	Weak transcription	HSMMtube	muscle
39	chr12:45687000-45697200	Weak transcription	Aorta	Aorta
40	chr12:45687200-45692200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr12:45687200-45692200	Weak transcription	Adipose Nuclei	Adipose
42	chr12:45687200-45692600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr12:45687200-45693600	Enhancers	Fetal Heart	heart
44	chr12:45688000-45693000	Weak transcription	HMEC	breast
45	chr12:45688400-45692000	Weak transcription	Colon Smooth Muscle	Colon
46	chr12:45688400-45694200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr12:45689200-45692600	Enhancers	Psoas Muscle	Psoas
48	chr12:45689400-45692000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr12:45690000-45692000	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr12:45690000-45693200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links