The 2.0 version of rSNPBase

Variant report

Variant rs548533875
Chromosome Location chr12:4930001-4930002
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:4925200-4932000 Enhancers Primary B cells from peripheral blood blood
2 chr12:4925600-4934600 Enhancers Primary B cells from cord blood blood
3 chr12:4926400-4939000 Weak transcription Spleen Spleen
4 chr12:4927400-4934400 Weak transcription Stomach Smooth Muscle stomach
5 chr12:4927400-4935400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr12:4927600-4930800 Enhancers Fetal Brain Male brain
7 chr12:4927800-4933200 Weak transcription Primary T helper naive cells from peripheral blood blood
8 chr12:4927800-4933200 Weak transcription Primary T helper naive cells fromperipheralblood blood
9 chr12:4927800-4938800 Weak transcription Brain Germinal Matrix brain
10 chr12:4928000-4935800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
11 chr12:4928200-4930400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr12:4928200-4932400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
13 chr12:4928200-4933400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr12:4928400-4931400 Enhancers Primary hematopoietic stem cells short term culture blood
15 chr12:4928400-4932000 Enhancers Primary hematopoietic stem cells blood
16 chr12:4928400-4933200 Weak transcription Primary T helper cells PMA-I stimulated --
17 chr12:4928600-4930200 Weak transcription Right Atrium heart
18 chr12:4928600-4930600 Enhancers Primary monocytes fromperipheralblood blood
19 chr12:4928600-4931000 Enhancers Rectal Smooth Muscle rectum
20 chr12:4928600-4931600 Enhancers Colon Smooth Muscle Colon
21 chr12:4928800-4930600 Enhancers Duodenum Smooth Muscle Duodenum
22 chr12:4929000-4930400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr12:4929000-4934800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
24 chr12:4929000-4939200 Weak transcription Brain Cingulate Gyrus brain
25 chr12:4929200-4930200 Weak transcription Placenta Placenta
26 chr12:4929200-4933200 Weak transcription Thymus Thymus
27 chr12:4929200-4934000 Weak transcription Primary T cells from cord blood blood
28 chr12:4929200-4966600 Weak transcription Brain Inferior Temporal Lobe brain
29 chr12:4929400-4930600 Enhancers Pancreatic Islets Pancreatic Islet
30 chr12:4929400-4930800 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
31 chr12:4929400-4933200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr12:4929400-4934000 Weak transcription Monocytes-CD14+_RO01746 blood
33 chr12:4929400-4937800 Weak transcription Fetal Brain Female brain
34 chr12:4929400-4966600 Weak transcription Brain Angular Gyrus brain
35 chr12:4929600-4930800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr12:4929800-4930200 Weak transcription GM12878-XiMat blood
37 chr12:4929800-4930400 Enhancers Fetal Muscle Leg muscle
38 chr12:4929800-4930600 Enhancers Fetal Stomach stomach
39 chr12:4929800-4933800 Weak transcription Fetal Thymus thymus
40 chr12:4930000-4930800 Enhancers Fetal Kidney kidney
41 chr12:4930000-4931000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015