Variant report

Variant	rs548535172
Chromosome Location	chr2:125290941-125290942
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834355	chr2:125128585-125291043	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv520468	chr2:125290839-125291034	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125288400-125291000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:125290200-125291600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:125290400-125291400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:125290400-125291600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:125290600-125291600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr2:125290800-125291000	Enhancers	Stomach Smooth Muscle	stomach
7	chr2:125290800-125291200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr2:125290800-125291400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:125290800-125291800	Enhancers	Fetal Stomach	stomach
10	chr2:125290800-125292000	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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