The 2.0 version of rSNPBase

Variant report

Variant rs548554249
Chromosome Location chr3:17125204-17125205
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:17089400-17135000 Weak transcription Pancreas Pancrea
2 chr3:17103400-17134400 Strong transcription Monocytes-CD14+_RO01746 blood
3 chr3:17107000-17133400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
4 chr3:17107200-17126200 Weak transcription Fetal Kidney kidney
5 chr3:17110800-17132200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr3:17111400-17129400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr3:17111800-17130600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr3:17112000-17132000 Weak transcription Duodenum Mucosa Duodenum
9 chr3:17112200-17137400 Weak transcription Brain Germinal Matrix brain
10 chr3:17112600-17126000 Weak transcription Fetal Brain Female brain
11 chr3:17112600-17127800 Weak transcription Fetal Lung lung
12 chr3:17112600-17129600 Weak transcription Brain Angular Gyrus brain
13 chr3:17112600-17130200 Weak transcription Brain Anterior Caudate brain
14 chr3:17112600-17135800 Weak transcription H1 Cell Line embryonic stem cell
15 chr3:17112800-17131200 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr3:17112800-17135200 Weak transcription Fetal Brain Male brain
17 chr3:17114400-17126800 Strong transcription Primary B cells from cord blood blood
18 chr3:17114400-17131600 Weak transcription Colonic Mucosa Colon
19 chr3:17116800-17126000 Weak transcription Dnd41 blood
20 chr3:17116800-17130200 Weak transcription Thymus Thymus
21 chr3:17117400-17127600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
22 chr3:17117800-17127600 Weak transcription Primary T killer memory cells from peripheral blood blood
23 chr3:17117800-17128000 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr3:17118400-17126800 Strong transcription Primary B cells from peripheral blood blood
25 chr3:17118600-17126800 Strong transcription Primary monocytes fromperipheralblood blood
26 chr3:17119200-17126800 Strong transcription Primary neutrophils fromperipheralblood blood
27 chr3:17119600-17125600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr3:17120000-17125800 Strong transcription Primary T helper cells PMA-I stimulated --
29 chr3:17120400-17133400 Weak transcription Primary hematopoietic stem cells short term culture blood
30 chr3:17120400-17135000 Weak transcription HUVEC blood vessel
31 chr3:17121000-17129600 Weak transcription Right Ventricle heart
32 chr3:17121000-17134400 Weak transcription Gastric stomach
33 chr3:17121600-17126600 Weak transcription Fetal Intestine Small intestine
34 chr3:17121600-17127800 Weak transcription Primary T helper naive cells fromperipheralblood blood
35 chr3:17121600-17132200 Weak transcription Fetal Stomach stomach
36 chr3:17121800-17129000 Weak transcription Aorta Aorta
37 chr3:17122200-17126600 Strong transcription Primary hematopoietic stem cells blood
38 chr3:17122400-17126600 Strong transcription Liver Liver
39 chr3:17122800-17128000 Weak transcription Primary T killer naive cells fromperipheralblood blood
40 chr3:17122800-17128200 Weak transcription Fetal Heart heart
41 chr3:17122800-17131200 Weak transcription Spleen Spleen
42 chr3:17122800-17136000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr3:17123000-17129000 Weak transcription Psoas Muscle Psoas
44 chr3:17123000-17130000 Weak transcription Adipose Nuclei Adipose
45 chr3:17123000-17130200 Weak transcription Placenta Placenta
46 chr3:17123000-17130600 Weak transcription Stomach Smooth Muscle stomach
47 chr3:17123000-17131200 Weak transcription Fetal Adrenal Gland Adrenal Gland
48 chr3:17123200-17130200 Weak transcription Primary T regulatory cells fromperipheralblood blood
49 chr3:17123200-17132200 Weak transcription Sigmoid Colon Sigmoid Colon
50 chr3:17123400-17129600 Weak transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015