Variant report

Variant	rs548571400
Chromosome Location	chr6:36756337-36756338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36754481..36756552-chr6:36838736..36841694,2	K562	blood:
2	chr6:36735042..36738016-chr6:36756015..36758776,2	K562	blood:
3	chr6:36746005..36749095-chr6:36753090..36757403,5	K562	blood:

Variant related genes	Relation type
ENSG00000198663	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv818413	chr6:36755402-36759768	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36746000-36756600	Weak transcription	Fetal Brain Male	brain
2	chr6:36746600-36756400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:36748600-36756400	Weak transcription	Fetal Kidney	kidney
4	chr6:36749600-36756800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:36752600-36768400	Weak transcription	Right Atrium	heart
6	chr6:36754200-36756400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:36754400-36756400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:36754400-36756600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:36754400-36756600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:36754600-36756400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:36754800-36756400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:36755600-36757800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:36755800-36757600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:36756000-36757200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:36756000-36757200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:36756000-36757600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:36756000-36757600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:36756000-36758200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:36756200-36756400	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:36756200-36756400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
21	chr6:36756200-36756400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr6:36756200-36756400	Bivalent Enhancer	HepG2	liver
23	chr6:36756200-36757000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:36756200-36757000	Enhancers	Osteobl	bone
25	chr6:36756200-36757200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:36756200-36757200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:36756200-36757200	Enhancers	Brain Angular Gyrus	brain
28	chr6:36756200-36757200	Enhancers	Brain Anterior Caudate	brain
29	chr6:36756200-36757400	Enhancers	Brain Hippocampus Middle	brain
30	chr6:36756200-36757600	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr6:36756200-36757600	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr6:36756200-36757800	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr6:36756200-36757800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:36756200-36757800	Enhancers	Brain Cingulate Gyrus	brain
35	chr6:36756200-36759200	Weak transcription	Brain Germinal Matrix	brain

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