The 2.0 version of rSNPBase

Variant report

Variant rs548571617
Chromosome Location chr22:33117403-33117404
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:33111000-33118600 Weak transcription HSMMtube muscle
2 chr22:33112200-33121400 Enhancers Fetal Thymus thymus
3 chr22:33113000-33121600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
4 chr22:33113400-33120400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
5 chr22:33114200-33119400 Weak transcription Esophagus oesophagus
6 chr22:33114400-33119000 Weak transcription Small Intestine intestine
7 chr22:33114400-33119400 Weak transcription Left Ventricle heart
8 chr22:33114400-33121400 Weak transcription Colon Smooth Muscle Colon
9 chr22:33114600-33121800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
10 chr22:33115600-33119600 Enhancers Thymus Thymus
11 chr22:33115800-33119400 Enhancers Dnd41 blood
12 chr22:33115800-33122200 Enhancers Primary hematopoietic stem cells short term culture blood
13 chr22:33116000-33117600 Enhancers Fetal Intestine Small intestine
14 chr22:33116000-33119400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr22:33116000-33119600 Enhancers Primary T cells from cord blood blood
16 chr22:33116200-33119400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr22:33116400-33119600 Enhancers Primary T helper naive cells fromperipheralblood blood
18 chr22:33116400-33120400 Enhancers Breast Myoepithelial Primary Cells Breast
19 chr22:33116400-33120600 Enhancers Primary T helper cells PMA-I stimulated --
20 chr22:33116600-33118000 Enhancers Primary T helper cells fromperipheralblood blood
21 chr22:33116600-33118000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr22:33116600-33120400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
23 chr22:33116600-33120400 Enhancers Osteobl bone
24 chr22:33116600-33120800 Enhancers Fetal Stomach stomach
25 chr22:33116800-33117600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr22:33116800-33117600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
27 chr22:33116800-33117600 Enhancers NHLF lung
28 chr22:33116800-33118200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr22:33116800-33118200 Enhancers Primary T helper naive cells from peripheral blood blood
30 chr22:33116800-33120400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr22:33116800-33121600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
32 chr22:33116800-33121800 Enhancers Primary monocytes fromperipheralblood blood
33 chr22:33117000-33117800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr22:33117000-33119200 Weak transcription Fetal Kidney kidney
35 chr22:33117000-33119400 Weak transcription Colonic Mucosa Colon
36 chr22:33117200-33117800 Weak transcription Placenta Placenta
37 chr22:33117200-33118400 Enhancers HepG2 liver
38 chr22:33117200-33118600 Weak transcription Primary T killer naive cells fromperipheralblood blood
39 chr22:33117200-33119000 Weak transcription NH-A brain
40 chr22:33117200-33120600 Enhancers HMEC breast
41 chr22:33117400-33117800 Bivalent Enhancer Monocytes-CD14+_RO01746 blood
42 chr22:33117400-33118200 Weak transcription Spleen Spleen
43 chr22:33117400-33118400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr22:33117400-33118400 Weak transcription Primary hematopoietic stem cells blood
45 chr22:33117400-33118400 Weak transcription Fetal Muscle Trunk muscle
46 chr22:33117400-33118400 Weak transcription Fetal Muscle Leg muscle
47 chr22:33117400-33118600 Weak transcription Primary T killer memory cells from peripheral blood blood
48 chr22:33117400-33118600 Weak transcription Right Atrium heart
49 chr22:33117400-33118800 Weak transcription Adipose Nuclei Adipose
50 chr22:33117400-33118800 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015