Variant report

Variant	rs548605438
Chromosome Location	chr4:129363223-129363224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	esv275440	chr4:129362619-129369873	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129358600-129363600	Weak transcription	Gastric	stomach
2	chr4:129361200-129363800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:129362600-129363800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:129362600-129364800	Weak transcription	A549	lung
5	chr4:129362600-129367000	Weak transcription	Pancreas	Pancrea
6	chr4:129362600-129368600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:129362800-129364800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:129363200-129372400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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