Variant report

Variant	rs548633413
Chromosome Location	chr9:85377259-85377260
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2762819	chr9:85376276-85384244	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2764140	chr9:85376276-85384244	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv442159	chr9:85376569-85384244	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85372800-85377400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:85372800-85377600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:85374400-85391000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:85375600-85378200	Enhancers	Thymus	Thymus
5	chr9:85375600-85379600	Enhancers	Fetal Thymus	thymus
6	chr9:85376200-85378600	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:85376400-85378600	Weak transcription	Dnd41	blood
8	chr9:85376400-85379600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:85377000-85380600	Enhancers	Primary hematopoietic stem cells	blood
10	chr9:85377200-85377400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr9:85377200-85377600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:85377200-85377800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:85377200-85378000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr9:85377200-85381200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:85377200-85381200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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