Variant report

Variant	rs548675081
Chromosome Location	chr6:132127960-132127961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000200895	Chromatin interaction
ENSG00000237115	Chromatin interaction
ENSG00000219532	Chromatin interaction
ENSG00000164751	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv5479	chr6:132101897-132136593	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	esv3423490	chr6:132127884-132130632	Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132124800-132128200	Weak transcription	Stomach Mucosa	stomach
2	chr6:132124800-132128400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:132124800-132128400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:132124800-132128400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:132125000-132128200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:132125000-132128200	Weak transcription	Fetal Stomach	stomach
7	chr6:132126200-132128400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:132126600-132128400	Weak transcription	Ovary	ovary
9	chr6:132126800-132128200	Enhancers	HepG2	liver
10	chr6:132127000-132128200	Weak transcription	Fetal Kidney	kidney
11	chr6:132127400-132128000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
12	chr6:132127400-132128200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:132127600-132128000	Weak transcription	Liver	Liver
14	chr6:132127600-132128200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:132127600-132128200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:132127800-132128000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
17	chr6:132127800-132128200	Enhancers	NHDF-Ad	bronchial
18	chr6:132127800-132128200	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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