Variant report

Variant	rs548707573
Chromosome Location	chr21:14339542-14339543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586984	chr21:14338286-14432856	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1809537	chr21:14338286-14497151	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv11295	chr21:14338455-14368624	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	esv3439823	chr21:14338747-14339851	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3369171	chr21:14338822-14340250	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	inside rSNPs	n/a
6	esv3367259	chr21:14339247-14349344	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv3353698	chr21:14339251-14344767	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	n/a
8	esv3393053	chr21:14339257-14339848	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:14338200-14345600	ZNF genes & repeats	Liver	Liver
2	chr21:14338200-14346000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr21:14338200-14346000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr21:14338200-14351800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr21:14338200-14363600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr21:14338400-14339600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr21:14338400-14347000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr21:14338600-14339600	ZNF genes & repeats	Fetal Brain Male	brain
9	chr21:14338800-14339600	ZNF genes & repeats	HUVEC	blood vessel
10	chr21:14338800-14342400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr21:14338800-14342600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
12	chr21:14338800-14350800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
13	chr21:14339000-14339600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
14	chr21:14339000-14345600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr21:14339200-14339600	ZNF genes & repeats	NH-A	brain
16	chr21:14339400-14340800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr21:14339400-14340800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr21:14339400-14340800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr21:14339400-14359000	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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