Variant report

Variant	rs548724297
Chromosome Location	chr5:76079920-76079921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1035135	chr5:75927027-76092058	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv965590	chr5:76061083-76081416	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv462213	chr5:76067624-76112869	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv598682	chr5:76067624-76112869	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1015997	chr5:76079720-76129241	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76070600-76080600	Weak transcription	Fetal Intestine Small	intestine
2	chr5:76075400-76080200	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:76075600-76084200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:76076000-76083000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:76076000-76084200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:76077200-76081800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:76077600-76081400	Enhancers	A549	lung
8	chr5:76077800-76081600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:76077800-76085800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:76078200-76084200	Enhancers	HUVEC	blood vessel
11	chr5:76078800-76080200	Weak transcription	Fetal Intestine Large	intestine
12	chr5:76078800-76080600	Weak transcription	HepG2	liver
13	chr5:76078800-76081000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:76079000-76082800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:76079000-76083400	Weak transcription	Spleen	Spleen
16	chr5:76079000-76084200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr5:76079200-76080800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:76079600-76080400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr5:76079600-76080800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr5:76079800-76080400	Enhancers	H9 Cell Line	embryonic stem cell
21	chr5:76079800-76080400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr5:76079800-76080600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr5:76079800-76081600	Weak transcription	Stomach Mucosa	stomach
24	chr5:76079800-76083000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr5:76079800-76084000	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links