Variant report

Variant	rs548740121
Chromosome Location	chr6:30235460-30235461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30233853..30235858-chr6:30238091..30240138,2	K562	blood:
2	chr6:30235309..30237040-chr6:30295546..30298007,2	K562	blood:
3	chr6:30227118..30230021-chr6:30233412..30236216,2	MCF-7	breast:
4	chr6:30233530..30235918-chr6:30253137..30255680,2	K562	blood:
5	chr6:30233837..30236152-chr6:30240056..30242630,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248167	Chromatin interaction
ENSG00000204599	Chromatin interaction
ENSG00000243753	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884061	chr6:30234627-30250450	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30228200-30237400	Weak transcription	Aorta	Aorta
2	chr6:30228400-30236800	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:30228400-30238000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:30228400-30238200	Weak transcription	Left Ventricle	heart
5	chr6:30228400-30239600	Weak transcription	HepG2	liver
6	chr6:30228400-30239800	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:30228600-30236600	Weak transcription	Brain Substantia Nigra	brain
8	chr6:30229200-30235600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:30229400-30236400	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:30230800-30236200	Weak transcription	GM12878-XiMat	blood
11	chr6:30231600-30239600	Weak transcription	Brain Angular Gyrus	brain
12	chr6:30232200-30235800	Weak transcription	Brain Anterior Caudate	brain
13	chr6:30232800-30235600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:30233200-30235800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:30233200-30243600	Weak transcription	HSMMtube	muscle
16	chr6:30233400-30235600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:30233400-30236000	Weak transcription	Osteobl	bone
18	chr6:30233800-30236200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:30233800-30241200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:30235000-30237400	Weak transcription	Primary B cells from cord blood	blood

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