Variant report

Variant	rs548749965
Chromosome Location	chr6:82739914-82739915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034389	chr6:82721569-82746599	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82732400-82748600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:82733000-82740400	Weak transcription	HepG2	liver
3	chr6:82733200-82743800	Weak transcription	HSMM	muscle
4	chr6:82733800-82740000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:82735600-82740200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:82735600-82740200	Weak transcription	NHDF-Ad	bronchial
7	chr6:82735600-82740600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:82736600-82743200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:82738600-82740800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:82739200-82740800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:82739200-82741400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:82739600-82740800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:82739600-82741000	Enhancers	HMEC	breast
14	chr6:82739800-82741000	Enhancers	NHEK	skin
15	chr6:82739800-82741600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:82739800-82741800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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