Variant report
| Variant | rs548806359 |
|---|---|
| Chromosome Location | chr16:65161251-65161252 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr16:65161160-65161310 | GM12866 | blood: | n/a | n/a |
| 2 | CTCF | chr16:65161220-65161370 | HMEC | breast: | n/a | n/a |
| 3 | CTCF | chr16:65161220-65161370 | GM12872 | blood: | n/a | n/a |
| 4 | CTCF | chr16:65161160-65161310 | HA-sp | spinal cord: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CDH11 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833260 | chr16:65050647-65218759 | Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | esv34131 | chr16:65137094-65379496 | Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | esv3328210 | chr16:65160551-65164549 | Active TSS Enhancers | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv3372719 | chr16:65160876-65163424 | Enhancers | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv3381931 | chr16:65161126-65164624 | Enhancers | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
