Variant report

Variant	rs548815239
Chromosome Location	chr3:24090754-24090755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2527637	chr3:24090223-24091668	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2357667	chr3:24090605-24091257	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3517830	chr3:24090621-24091119	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv9492	chr3:24090661-24091147	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3461613	chr3:24090670-24091144	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3487657	chr3:24090692-24091151	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3487654	chr3:24090699-24091133	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3487655	chr3:24090714-24091076	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3461614	chr3:24090721-24091113	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3461615	chr3:24090726-24091110	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3487658	chr3:24090729-24091093	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3461612	chr3:24090732-24091070	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3376084	chr3:24090749-24091063	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24088200-24091400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:24088400-24091800	Enhancers	NHDF-Ad	bronchial
3	chr3:24088600-24090800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:24088800-24090800	Enhancers	Adipose Nuclei	Adipose
5	chr3:24088800-24090800	Enhancers	Placenta	Placenta
6	chr3:24088800-24090800	Enhancers	Ovary	ovary
7	chr3:24088800-24090800	Enhancers	HMEC	breast
8	chr3:24088800-24090800	Enhancers	NHLF	lung
9	chr3:24088800-24091400	Enhancers	HSMMtube	muscle
10	chr3:24089800-24091600	Weak transcription	Psoas Muscle	Psoas
11	chr3:24089800-24092800	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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