Variant report

Variant	rs548815748
Chromosome Location	chr1:90747889-90747890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546803	chr1:90679734-90777717	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv524317	chr1:90729744-90836739	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv946064	chr1:90746594-90749792	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90736200-90752000	Weak transcription	Aorta	Aorta
2	chr1:90747200-90748000	Enhancers	NHEK	skin
3	chr1:90747200-90748400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:90747200-90748600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr1:90747200-90748800	Enhancers	Fetal Lung	lung
6	chr1:90747400-90748000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:90747400-90748200	Enhancers	HMEC	breast
8	chr1:90747800-90748000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:90747800-90748000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:90747800-90748000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:90747800-90748600	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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