Variant report

Variant	rs548831369
Chromosome Location	chr15:79102480-79102481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:79102454-79104826	SK-N-SH	brain:	n/a	chr15:79104011-79104024 chr15:79104004-79104025 chr15:79102942-79102951 chr15:79104009-79104027 chr15:79104011-79104024 chr15:79102942-79102955 chr15:79104014-79104027 chr15:79104010-79104026
2	POLR2A	chr15:79102406-79104140	H1-neurons	neurons:	n/a	n/a
3	NFIC	chr15:79102445-79103101	ECC-1	luminal epithelium:	n/a	n/a
4	POLR2A	chr15:79102471-79103015	HUVEC	blood vessel:	n/a	n/a
5	REST	chr15:79102183-79104345	H1-neurons	neurons:	n/a	chr15:79103670-79103680 chr15:79103965-79103975 chr15:79102977-79102987 chr15:79103141-79103154
6	NFIC	chr15:79102456-79103233	ECC-1	luminal epithelium:	n/a	n/a
7	SIN3A	chr15:79102418-79103906	H1-hESC	embryonic stem cell:	n/a	chr15:79103433-79103444 chr15:79102945-79102958 chr15:79103670-79103679
8	MAZ	chr15:79102260-79104839	IMR90	lung:	n/a	chr15:79102334-79102343

Variant related genes	Relation type
MORF4L1	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3354433	chr15:79102422-79105270	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79088800-79102600	Weak transcription	Ovary	ovary
2	chr15:79101400-79102600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr15:79101400-79104200	Active TSS	H9 Cell Line	embryonic stem cell
4	chr15:79101600-79102600	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
5	chr15:79101800-79103000	Enhancers	Fetal Brain Male	brain
6	chr15:79101800-79103400	Active TSS	Fetal Brain Female	brain
7	chr15:79101800-79104200	Active TSS	Right Atrium	heart
8	chr15:79101800-79104400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:79102000-79102600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
10	chr15:79102000-79102600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:79102000-79102600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
12	chr15:79102000-79102800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
13	chr15:79102000-79102800	Flanking Active TSS	HUVEC	blood vessel
14	chr15:79102000-79103000	Enhancers	Fetal Heart	heart
15	chr15:79102000-79104200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:79102000-79104200	Active TSS	HSMMtube	muscle
17	chr15:79102200-79102600	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:79102200-79102600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:79102200-79102600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
20	chr15:79102200-79102600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:79102200-79102600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:79102200-79102600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:79102200-79102600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:79102200-79102600	Flanking Active TSS	Fetal Lung	lung
25	chr15:79102200-79102600	Enhancers	Psoas Muscle	Psoas
26	chr15:79102200-79102800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr15:79102200-79102800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
28	chr15:79102200-79102800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:79102200-79102800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
30	chr15:79102200-79102800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
31	chr15:79102200-79102800	Enhancers	Spleen	Spleen
32	chr15:79102200-79103600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
33	chr15:79102200-79104000	Active TSS	NH-A	brain
34	chr15:79102200-79104200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
35	chr15:79102200-79104200	Active TSS	Left Ventricle	heart
36	chr15:79102200-79104200	Active TSS	Osteobl	bone
37	chr15:79102400-79102600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr15:79102400-79102600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr15:79102400-79102600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:79102400-79102600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:79102400-79102600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:79102400-79102600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:79102400-79102600	Flanking Active TSS	Colon Smooth Muscle	Colon
44	chr15:79102400-79102600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
45	chr15:79102400-79102600	Flanking Bivalent TSS/Enh	Placenta	Placenta
46	chr15:79102400-79102600	Flanking Active TSS	Fetal Stomach	stomach
47	chr15:79102400-79102600	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum
48	chr15:79102400-79102600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
49	chr15:79102400-79102600	Bivalent Enhancer	Small Intestine	intestine
50	chr15:79102400-79102600	Flanking Bivalent TSS/Enh	NHLF	lung

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