Variant report

Variant	rs548857195
Chromosome Location	chr5:15720632-15720633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:46 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830214	chr5:15589809-15791032	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3507774	chr5:15593461-15822407	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3507776	chr5:15593461-15822407	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1024248	chr5:15638067-15863583	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv537677	chr5:15638067-15863583	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
13	esv2757107	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv2759327	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv432718	chr5:15688927-15723346	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv2763894	chr5:15714022-15863332	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv2760924	chr5:15716127-15730060	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv597265	chr5:15718791-15720856	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	esv3468861	chr5:15719031-15721332	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	nsv10671	chr5:15719037-15721344	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	nsv980965	chr5:15719140-15731242	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	esv3468863	chr5:15719318-15721056	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	esv17129	chr5:15719329-15720964	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	nsv597266	chr5:15719350-15720856	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	esv3468862	chr5:15719381-15721033	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	esv3468860	chr5:15719401-15720986	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	nsv597268	chr5:15719402-15720756	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	nsv597269	chr5:15719402-15720856	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	nsv597270	chr5:15719402-15723633	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
30	nsv471736	chr5:15719456-15720910	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
31	esv3468865	chr5:15719466-15720951	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
32	nsv823014	chr5:15719493-15720796	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
33	nsv514291	chr5:15719604-15720690	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
34	nsv597274	chr5:15719611-15720756	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
35	nsv597275	chr5:15719611-15720856	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
36	nsv597276	chr5:15719611-15721360	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
37	nsv597279	chr5:15719750-15720756	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
38	nsv597280	chr5:15719750-15720856	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
39	nsv597281	chr5:15719750-15721360	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
40	nsv597283	chr5:15719769-15720756	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
41	nsv597284	chr5:15719769-15720856	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
42	nsv597285	chr5:15719769-15721360	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
43	nsv597287	chr5:15719809-15720856	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
44	nsv597289	chr5:15719863-15720856	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
45	nsv597290	chr5:15719942-15720856	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
46	nsv597291	chr5:15720044-15720856	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15716600-15721000	Enhancers	HUVEC	blood vessel
2	chr5:15717400-15721400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:15717600-15721400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:15718200-15720800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr5:15718800-15721600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:15719000-15720800	Enhancers	Brain Substantia Nigra	brain
7	chr5:15719200-15720800	Enhancers	NHDF-Ad	bronchial
8	chr5:15719200-15725800	Weak transcription	Fetal Brain Male	brain
9	chr5:15719600-15720800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:15719800-15720800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:15719800-15720800	Enhancers	Brain Angular Gyrus	brain
12	chr5:15720000-15721200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:15720000-15721200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:15720400-15721400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr5:15720400-15721400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:15720400-15721400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr5:15720400-15721400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr5:15720400-15722000	Weak transcription	Left Ventricle	heart
19	chr5:15720600-15721000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:15720600-15724200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:15720600-15730000	Weak transcription	Fetal Heart	heart

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